From 93ba5fc8fcb12cf6a4b25cca6bd3d6e314d5fb29 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Thu, 25 Sep 2025 23:52:16 +0200 Subject: [PATCH 01/51] Update index.html Updating index --- index.html | 31 +++++++++++++++---------------- 1 file changed, 15 insertions(+), 16 deletions(-) diff --git a/index.html b/index.html index 040ff06..778258d 100644 --- a/index.html +++ b/index.html @@ -124,6 +124,9 @@

About

ELIXIR Ireland Institutions

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Team

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    Team

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+ + From f3ac59cecc259be8353d1a87276eecc8feb6268a Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:31:46 +0200 Subject: [PATCH 35/51] Refactor platforms.html layout structure Removed unnecessary div elements and adjusted layout. --- platforms.html | 15 +++------------ 1 file changed, 3 insertions(+), 12 deletions(-) diff --git a/platforms.html b/platforms.html index 6668603..08d2d66 100644 --- a/platforms.html +++ b/platforms.html @@ -3,12 +3,7 @@ title: Platforms --- -
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Platforms

Irish biologists and clinical researchers need to access local resources for computation and data storage of genomic and related data. @@ -17,9 +12,7 @@

Platforms

HEANET (Higher Education Authority based) to explore new solutions that meet the emerging needs of biological data analysis, which involves large and sensitive (human) datasets of DNAs, RNAs, proteins, and other data features, and in some cases needs heavy CPU usage.

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ELIXIR Europe Platforms

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- \ No newline at end of file + From e6b79b52f89ea0eac3dd4e750ee0e9b09427c909 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:32:31 +0200 Subject: [PATCH 36/51] Simplify HTML structure by removing divs Removed unnecessary div elements for layout. --- platforms.html | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/platforms.html b/platforms.html index 08d2d66..86dc770 100644 --- a/platforms.html +++ b/platforms.html @@ -14,9 +14,7 @@

Platforms


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ELIXIR Europe Platforms

  • Data Platform: Platform details
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    ELIXIR Europe Platforms

    Ireland contributes to these platforms through national projects and collaborations, supporting discovery, analysis, and training for life science data.

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+ + From f752b143fdc437ad9bece9bed2947a1853ed3582 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:35:34 +0200 Subject: [PATCH 37/51] Remove header bar from navigation Removed the header section containing the logo and title. --- _includes/nav.html | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/_includes/nav.html b/_includes/nav.html index 2c69d81..25b6f96 100644 --- a/_includes/nav.html +++ b/_includes/nav.html @@ -1,11 +1,6 @@
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- ELIXIR Ireland Logo - - ELIXIR Ireland Node - -
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From 09c02fcd76fa2de3dece7a7b9ca390a22af7b986 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:39:56 +0200 Subject: [PATCH 40/51] Remove navigation from nav.html Removed the navigation section from nav.html as it is now included directly in header.html. --- _includes/nav.html | 16 +--------------- 1 file changed, 1 insertion(+), 15 deletions(-) diff --git a/_includes/nav.html b/_includes/nav.html index 25b6f96..ab3514f 100644 --- a/_includes/nav.html +++ b/_includes/nav.html @@ -1,16 +1,2 @@ -
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- + From b4287e70778c2f0c4d0c79aedd35f858519b1ef6 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:42:52 +0200 Subject: [PATCH 41/51] Update event details and structure in events.html --- events.html | 19 +++++++++++++------ 1 file changed, 13 insertions(+), 6 deletions(-) diff --git a/events.html b/events.html index 7188ae3..862d8a5 100644 --- a/events.html +++ b/events.html @@ -26,12 +26,16 @@

Events

  • Annual Irish Society of Human Genetics (IGHG) meeting. Maynooth 2025
    • - From f64d42547b2da21e4432cb29204aafda7d4d701d Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:43:42 +0200 Subject: [PATCH 42/51] Simplify HTML structure in databases.html Removed unnecessary HTML structure from databases.html. --- databases.html | 15 ++------------- 1 file changed, 2 insertions(+), 13 deletions(-) diff --git a/databases.html b/databases.html index 95fdc46..2113efe 100644 --- a/databases.html +++ b/databases.html @@ -3,12 +3,7 @@ title: Databases --- -
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    Databases

    The following data resources are hosted by ELIXIR Ireland associated researchers: @@ -125,10 +120,4 @@

    Databases

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    \ No newline at end of file + From 541faf03b750c34e6d48b8411021294d35f75bc3 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:43:57 +0200 Subject: [PATCH 43/51] Simplify HTML structure in elix_ire_funded.html Removed unnecessary HTML structure from the funded projects page. --- elix_ire_funded.html | 10 ++-------- 1 file changed, 2 insertions(+), 8 deletions(-) diff --git a/elix_ire_funded.html b/elix_ire_funded.html index c5139f6..1d6f06a 100644 --- a/elix_ire_funded.html +++ b/elix_ire_funded.html @@ -3,10 +3,7 @@ title: ELIXIR Ireland Funded Projects --- -
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    ELIXIR Ireland Funded Projects

    EU Converge funding ( @@ -37,7 +34,4 @@

    ELIXIR Ireland Funded Projects

    Lead: University of Limerick (to Aedin Culhane. See The CANDLE mission begins in EU countries

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    \ No newline at end of file + From 744d343b8c0bbe1214992087539665de35c5c55a Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:45:03 +0200 Subject: [PATCH 44/51] Simplify HTML structure in news.html Removed unnecessary HTML structure from news.html. --- news.html | 17 ++++------------- 1 file changed, 4 insertions(+), 13 deletions(-) diff --git a/news.html b/news.html index f011368..24eda57 100644 --- a/news.html +++ b/news.html @@ -3,13 +3,8 @@ title: News --- -
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    + + From 9d974f4867da3cbdf9f4ed9c8fe36cba1fd6d273 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:45:27 +0200 Subject: [PATCH 45/51] Simplify HTML structure in training.html Removed unnecessary HTML structure from training page. --- training.html | 10 ++-------- 1 file changed, 2 insertions(+), 8 deletions(-) diff --git a/training.html b/training.html index a8eb56e..17ac261 100644 --- a/training.html +++ b/training.html @@ -3,10 +3,7 @@ title: Training --- -
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    What we provide

    ELIXIR Ireland offers training in fundamental data science @@ -203,7 +200,4 @@

    Past Events

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    \ No newline at end of file + From d9d0c7c02b7dc1044c5fa5744f479cb8a84bb793 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:47:09 +0200 Subject: [PATCH 46/51] Add 'News' link to header navigation --- _includes/header.html | 1 + 1 file changed, 1 insertion(+) diff --git a/_includes/header.html b/_includes/header.html index 7b50801..a2b5b46 100644 --- a/_includes/header.html +++ b/_includes/header.html @@ -16,6 +16,7 @@
  • Software
  • Platforms
  • Events
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  • News
  • Funded Projects
    • From cb798d53ee59242c81db0c7bedbf096fa1452df6 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:47:24 +0200 Subject: [PATCH 47/51] Fix HTML formatting issues in index.html --- index.html | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/index.html b/index.html index f0c95c0..b7de27a 100644 --- a/index.html +++ b/index.html @@ -2,7 +2,7 @@ layout: default title: Home --- -
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    About

    ELIXIR Ireland is the Irish node of the international @@ -71,7 +71,7 @@

    Team

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    + From 3e9dd097d590a2db2968212f76830c6015bb3b46 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:48:42 +0200 Subject: [PATCH 48/51] Remove heading from databases section Removed the heading for databases section. --- databases.html | 1 - 1 file changed, 1 deletion(-) diff --git a/databases.html b/databases.html index 2113efe..66bb5ad 100644 --- a/databases.html +++ b/databases.html @@ -4,7 +4,6 @@ --- -

    Databases

    The following data resources are hosted by ELIXIR Ireland associated researchers:

    From 1cdd7516846d4ce1b27ce2e0fc5d365889daccd8 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 04:59:14 +0200 Subject: [PATCH 49/51] Change image class from 'card-img-top' to 'small' --- training.html | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/training.html b/training.html index 17ac261..96d2113 100644 --- a/training.html +++ b/training.html @@ -24,7 +24,7 @@

    Training Team

    - Trainer + Trainer
    Maria Doyle @@ -39,7 +39,7 @@
    - Trainer + Trainer
    Lars Jermiin @@ -54,7 +54,7 @@
    - Trainer + Trainer
    Siobhán Cleary @@ -90,7 +90,7 @@

    Data Management Planning Resources and Training Material

    ELIXIR Tools for Data Management

    - RDMkit + RDMkit

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    ELIXIR Tools for Data Management

    - Data Stewardship Wizard + Data Stewardship Wizard

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    ELIXIR Tools for Data Management

    - Faircookbook + Faircookbook

    From bb240889954be24ab8ddb76117c66c1dab0cf498 Mon Sep 17 00:00:00 2001 From: Aedin Culhane Date: Fri, 26 Sep 2025 05:08:08 +0200 Subject: [PATCH 50/51] Remove custom stylesheet link from default layout Removed the stylesheet link for custom styles. --- _layouts/default.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_layouts/default.html b/_layouts/default.html index 2f2b144..b844888 100644 --- a/_layouts/default.html +++ b/_layouts/default.html @@ -7,7 +7,7 @@ - + {% if site.seo %} From ec94752c237fe928b55fa65d42e526dff62069ad Mon Sep 17 00:00:00 2001 From: aedin Date: Fri, 26 Sep 2025 04:19:51 +0100 Subject: [PATCH 51/51] Revert "Remove custom stylesheet link from default layout" This reverts commit bb240889954be24ab8ddb76117c66c1dab0cf498. --- _layouts/default.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_layouts/default.html b/_layouts/default.html index b844888..2f2b144 100644 --- a/_layouts/default.html +++ b/_layouts/default.html @@ -7,7 +7,7 @@ - + {% if site.seo %}