forked from KatiePelletier/WingShapeBSA
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathee_merging.txt
More file actions
5 lines (3 loc) · 827 Bytes
/
ee_merging.txt
File metadata and controls
5 lines (3 loc) · 827 Bytes
1
2
3
4
5
samtools merge /2/scratch/Katie/WingShapeBSA/mapped/bwa/BAM_files/merge/allFiles/ds_CN_all.bam dsCRA_TCCGGAGA-GTACTGAC_merged_aligned_PE_realigned_rmd.bam dsCRB_CGCTCATT-TATAGCCT_merged_aligned_PE_realigned_rmd.bam dsCRC_CGCTCATT-ATAGAGGC_merged_aligned_PE_realigned_rmd.bam
samtools merge /2/scratch/Katie/WingShapeBSA/mapped/bwa/BAM_files/merge/allFiles/ds_Dn_all.bam dsDNA_CGCTCATT-CCTATCCT_merged_aligned_PE_realigned_rmd.bam dsDNB_CGCTCATT-GGCTCTGA_merged_aligned_PE_realigned_rmd.bam dsDNC_ATTACTCG-TAATCTTA_merged_aligned_PE_realigned_rmd.bam
samtools merge /2/scratch/Katie/WingShapeBSA/mapped/bwa/BAM_files/merge/allFiles/ds_UP_all.bam dsUPA_ATTACTCG-CAGGACGT_merged_aligned_PE_realigned_rmd.bam dsUPB_ATTACTCG-GTACTGAC_merged_aligned_PE_realigned_rmd.bam dsUPC_TCCGGAGA-TATAGCCT_merged_aligned_PE_realigned_rmd.bam