VaCaHLA/environment.yml at main · DiltheyLab/VaCaHLA · GitHub

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name: vacahla
channels:
  - bioconda
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - aioeasywebdav=2.4.0=pyha770c72_0
  - aiohttp=3.8.3=py310h5764c6d_1
  - aiosignal=1.3.1=pyhd8ed1ab_0
  - amply=0.1.5=pyhd8ed1ab_0
  - appdirs=1.4.4=pyh9f0ad1d_0
  - async-timeout=4.0.2=pyhd8ed1ab_0
  - atk-1.0=2.38.0=hd4edc92_1
  - attmap=0.13.2=pyhd8ed1ab_0
  - attrs=22.2.0=pyh71513ae_0
  - backports=1.0=pyhd8ed1ab_3
  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
  - bcrypt=3.2.2=py310h5764c6d_1
  - boto3=1.26.56=pyhd8ed1ab_0
  - botocore=1.29.56=pyhd8ed1ab_0
  - brotlipy=0.7.0=py310h5764c6d_1005
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.18.1=h7f98852_0
  - ca-certificates=2022.12.7=ha878542_0
  - cachetools=5.3.0=pyhd8ed1ab_0
  - cairo=1.16.0=ha61ee94_1014
  - certifi=2022.12.7=pyhd8ed1ab_0
  - cffi=1.15.1=py310h255011f_3
  - charset-normalizer=2.1.1=pyhd8ed1ab_0
  - coin-or-cbc=2.10.8=h3786ebc_0
  - coin-or-cgl=0.60.6=h6f57e76_2
  - coin-or-clp=1.17.7=hc56784d_2
  - coin-or-osi=0.108.7=h2720bb7_2
  - coin-or-utils=2.11.6=h202d8b1_2
  - coincbc=2.10.8=0_metapackage
  - colorama=0.4.6=pyhd8ed1ab_0
  - configargparse=1.5.3=pyhd8ed1ab_0
  - connection_pool=0.0.3=pyhd3deb0d_0
  - cryptography=39.0.0=py310h34c0648_0
  - datrie=0.8.2=py310h5764c6d_6
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - docutils=0.19=py310hff52083_1
  - dpath=2.1.4=py310hff52083_0
  - dropbox=11.36.0=pyhd8ed1ab_0
  - exceptiongroup=1.1.0=pyhd8ed1ab_0
  - expat=2.5.0=h27087fc_0
  - filechunkio=1.8=py_2
  - filelock=3.9.0=pyhd8ed1ab_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=hab24e00_0
  - fontconfig=2.14.1=hc2a2eb6_0
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - freetype=2.12.1=hca18f0e_1
  - fribidi=1.0.10=h36c2ea0_0
  - frozenlist=1.3.3=py310h5764c6d_0
  - ftputil=5.0.4=pyhd8ed1ab_0
  - gdk-pixbuf=2.42.10=h05c8ddd_0
  - gettext=0.21.1=h27087fc_0
  - giflib=5.2.1=h36c2ea0_2
  - gitdb=4.0.10=pyhd8ed1ab_0
  - gitpython=3.1.30=pyhd8ed1ab_0
  - google-api-core=2.11.0=pyhd8ed1ab_0
  - google-api-python-client=2.74.0=pyhd8ed1ab_0
  - google-auth=2.16.0=pyh1a96a4e_1
  - google-auth-httplib2=0.1.0=pyhd8ed1ab_1
  - google-cloud-core=2.3.2=pyhd8ed1ab_0
  - google-cloud-storage=2.7.0=pyh1a96a4e_0
  - google-crc32c=1.1.2=py310he8fe98e_4
  - google-resumable-media=2.4.1=pyhd8ed1ab_0
  - googleapis-common-protos=1.57.1=pyhd8ed1ab_0
  - graphite2=1.3.13=h58526e2_1001
  - graphviz=3.0.0=h5abf519_1
  - grpcio=1.51.1=py310hc32fa93_0
  - gtk2=2.24.33=h90689f9_2
  - gts=0.7.6=h64030ff_2
  - harfbuzz=6.0.0=h8e241bc_0
  - httplib2=0.21.0=pyhd8ed1ab_0
  - humanfriendly=10.0=py310hff52083_4
  - icu=70.1=h27087fc_0
  - idna=3.4=pyhd8ed1ab_0
  - importlib-metadata=6.0.0=pyha770c72_0
  - importlib_resources=5.10.2=pyhd8ed1ab_0
  - iniconfig=2.0.0=pyhd8ed1ab_0
  - jinja2=3.1.2=pyhd8ed1ab_1
  - jmespath=1.0.1=pyhd8ed1ab_0
  - jpeg=9e=h166bdaf_2
  - jsonschema=4.17.3=pyhd8ed1ab_0
  - jupyter_core=5.1.5=py310hff52083_0
  - ld_impl_linux-64=2.39=hcc3a1bd_1
  - lerc=4.0.0=h27087fc_0
  - libabseil=20220623.0=cxx17_h05df665_6
  - libblas=3.9.0=16_linux64_openblas
  - libcblas=3.9.0=16_linux64_openblas
  - libcrc32c=1.1.2=h9c3ff4c_0
  - libdeflate=1.17=h0b41bf4_0
  - libffi=3.4.2=h7f98852_5
  - libgcc-ng=12.2.0=h65d4601_19
  - libgd=2.3.3=h5aea950_4
  - libgfortran-ng=12.2.0=h69a702a_19
  - libgfortran5=12.2.0=h337968e_19
  - libglib=2.74.1=h606061b_1
  - libgomp=12.2.0=h65d4601_19
  - libgrpc=1.51.1=h30feacc_0
  - libiconv=1.17=h166bdaf_0
  - liblapack=3.9.0=16_linux64_openblas
  - liblapacke=3.9.0=16_linux64_openblas
  - libnsl=2.0.0=h7f98852_0
  - libopenblas=0.3.21=pthreads_h78a6416_3
  - libpng=1.6.39=h753d276_0
  - libprotobuf=3.21.12=h3eb15da_0
  - librsvg=2.54.4=h7abd40a_0
  - libsodium=1.0.18=h36c2ea0_1
  - libsqlite=3.40.0=h753d276_0
  - libstdcxx-ng=12.2.0=h46fd767_19
  - libtiff=4.5.0=h6adf6a1_2
  - libtool=2.4.7=h27087fc_0
  - libuuid=2.32.1=h7f98852_1000
  - libwebp=1.2.4=h1daa5a0_1
  - libwebp-base=1.2.4=h166bdaf_0
  - libxcb=1.13=h7f98852_1004
  - libxml2=2.10.3=h7463322_0
  - libzlib=1.2.13=h166bdaf_4
  - logmuse=0.2.6=pyh8c360ce_0
  - markdown-it-py=2.1.0=pyhd8ed1ab_0
  - markupsafe=2.1.2=py310h1fa729e_0
  - mdurl=0.1.0=pyhd8ed1ab_0
  - multidict=6.0.4=py310h1fa729e_0
  - nbformat=5.7.3=pyhd8ed1ab_0
  - ncurses=6.3=h27087fc_1
  - numpy=1.24.1=py310h08bbf29_0
  - oauth2client=4.1.3=py_0
  - openssl=3.0.7=h0b41bf4_1
  - packaging=23.0=pyhd8ed1ab_0
  - pandas=1.5.3=py310h9b08913_0
  - pango=1.50.12=hd33c08f_1
  - paramiko=2.12.0=pyhd8ed1ab_0
  - pcre2=10.40=hc3806b6_0
  - peppy=0.35.3=pyhd8ed1ab_0
  - pip=22.3.1=pyhd8ed1ab_0
  - pixman=0.40.0=h36c2ea0_0
  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
  - plac=1.3.5=pyhd8ed1ab_0
  - platformdirs=2.6.2=pyhd8ed1ab_0
  - pluggy=1.0.0=pyhd8ed1ab_5
  - ply=3.11=py_1
  - prettytable=3.6.0=pyhd8ed1ab_0
  - protobuf=4.21.12=py310heca2aa9_0
  - psutil=5.9.4=py310h5764c6d_0
  - pthread-stubs=0.4=h36c2ea0_1001
  - pulp=2.7.0=py310hff52083_0
  - pyasn1=0.4.8=py_0
  - pyasn1-modules=0.2.7=py_0
  - pycparser=2.21=pyhd8ed1ab_0
  - pydot=1.4.2=py310hff52083_1
  - pygments=2.14.0=pyhd8ed1ab_0
  - pynacl=1.5.0=py310h5764c6d_2
  - pyopenssl=23.0.0=pyhd8ed1ab_0
  - pyparsing=3.0.9=pyhd8ed1ab_0
  - pyrsistent=0.19.3=py310h1fa729e_0
  - pysftp=0.2.9=py_1
  - pysocks=1.7.1=pyha2e5f31_6
  - pytest=7.2.1=pyhd8ed1ab_0
  - python=3.10.8=h4a9ceb5_0_cpython
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python-fastjsonschema=2.16.2=pyhd8ed1ab_0
  - python-irodsclient=1.1.6=pyhd8ed1ab_0
  - python_abi=3.10=3_cp310
  - pytz=2022.7.1=pyhd8ed1ab_0
  - pyu2f=0.1.5=pyhd8ed1ab_0
  - pyyaml=6.0=py310h5764c6d_5
  - re2=2022.06.01=h27087fc_1
  - readline=8.1.2=h0f457ee_0
  - requests=2.28.2=pyhd8ed1ab_0
  - reretry=0.11.8=pyhd8ed1ab_0
  - rich=13.2.0=pyhd8ed1ab_1
  - rsa=4.9=pyhd8ed1ab_0
  - s3transfer=0.6.0=pyhd8ed1ab_0
  - setuptools=66.1.1=pyhd8ed1ab_0
  - setuptools-scm=7.1.0=pyhd8ed1ab_0
  - six=1.16.0=pyh6c4a22f_0
  - slacker=0.14.0=py_0
  - smart_open=6.3.0=pyhd8ed1ab_1
  - smmap=3.0.5=pyh44b312d_0
  - snakemake=7.20.0=hdfd78af_0
  - snakemake-minimal=7.20.0=pyhdfd78af_0
  - stone=3.3.1=pyhd8ed1ab_0
  - stopit=1.1.2=py_0
  - tabulate=0.9.0=pyhd8ed1ab_1
  - throttler=1.2.1=pyhd8ed1ab_0
  - tk=8.6.12=h27826a3_0
  - tomli=2.0.1=pyhd8ed1ab_0
  - toposort=1.9=pyhd8ed1ab_0
  - traitlets=5.8.1=pyhd8ed1ab_0
  - typing-extensions=4.4.0=hd8ed1ab_0
  - typing_extensions=4.4.0=pyha770c72_0
  - tzdata=2022g=h191b570_0
  - ubiquerg=0.6.2=pyhd8ed1ab_0
  - uritemplate=4.1.1=pyhd8ed1ab_0
  - urllib3=1.26.14=pyhd8ed1ab_0
  - veracitools=0.1.3=py_0
  - wcwidth=0.2.6=pyhd8ed1ab_0
  - wheel=0.38.4=pyhd8ed1ab_0
  - wrapt=1.14.1=py310h5764c6d_1
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.0.10=h7f98852_0
  - xorg-libsm=1.2.3=hd9c2040_1000
  - xorg-libx11=1.7.2=h7f98852_0
  - xorg-libxau=1.0.9=h7f98852_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h7f98852_1
  - xorg-libxrender=0.9.10=h7f98852_1003
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7f98852_2
  - yarl=1.8.2=py310h5764c6d_0
  - yte=1.5.1=py310hff52083_1
  - zipp=3.11.0=pyhd8ed1ab_0
  - zlib=1.2.13=h166bdaf_4
  - zstd=1.5.2=h3eb15da_6
  - pip:
      - contextlib2==21.6.0
      - networkx==2.8