Skip to content

Problem with ONT data #128

@reshu23

Description

@reshu23

Dear Team,
I am using hla-la for ONT WGS data. When I used hla-la with CRAM file without unmapped reads. It executed successfully. But now I am using CRAM file with unmapped reads, pipeline is stuck at one point for 23 hours, I can not see any progress also as "remapped..a.bam.unsorted" file size is 0 bytes.
Can you please suggest me reason of this problem? Please find attached screen shot of code as well as log:
Memory used by me: cpu-per-task=24, memory=100G

Thank you

Image

Image

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions