ExpoSeq/pyproject.toml at final_master · DigBioLab/ExpoSeq · GitHub

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[project]
name = "ExpoSeq"
version = "4.6.1"
description = "A pacakge which provides various ways to analyze NGS data from phage display campaigns"
authors = [
    {name = "Nils Hofmann", email = "nilhof01@gmail.com"},
]
dependencies = [
    "PyQT6",
    "PyQT5",
    "biopython==1.80",
    "editdistance==0.6.2",
    "logomaker==0.8",
    "markdown",
    "matplotlib==3.7.3",
    "networkx==3.1",
    "numpy==1.23.5",
    "openpyxl",
    "pandas==1.5.3",
    "pandasai==1.3.3",
    "python-louvain==0.16",
    "scikit-learn>=1.2.1",
    "scipy==1.11.4",
    "seaborn==0.12.2",
    "sentencepiece==0.1.99",
    "sgt==2.0.3",
    "squarify==0.4.3",
    "tabulate==0.9.0",
    "torch==2.1.0",
    "transformers==4.34.1",
    "matplotlib-venn",
    "umap-learn==0.5.5",
    "iglabel==0.0.7",
    "rjieba",
    "protobuf",
    "peptides"
]
requires-python = ">=3.9"
readme = "README.md"
license = {text = "LICENCE"}

[project.urls]
Homepage = "https://github.com/nilshof01/ExpoSeq"
[build-system]
requires = ["setuptools>=61", "wheel"]
build-backend = "setuptools.build_meta"


[tool.pdm]
package-type = "library"
package-dir = "src"


[tool.pdm.dev-dependencies]
test = [
    "pytest>=7.1.2",
]

[tool.pdm.scripts]
test = "python -m pytest -s src/ExpoSeq/software_tests/tests"
test_new = "python -m pytest -s src/ExpoSeq/software_tests/test_new"
test_intermediate = "python -m pytest -s src/ExpoSeq/software_tests/test_intermediate"