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README for Julia code:

Usage

  • REQUIREMENT: You've run CODE/Makefile to generate the CODE/model_single_3D executable.
    • Makefiles are finnicky...this is the kind of thing Claude Code is good at figuring out.
  • Change directory to root of repo, then:
using CellSims

# All settings used to generate different Ca_NSR inputs
sims = all_simulations()

Generating Runs

# Generating simulations for a single setting of BCL/ISO:
julia --project=. src/generate.jl BCL ISO [N]

# Example: 10 runs with BCL=300 and ISO=1
julia --project=. src/generate.jl 300 1 10

# Generating simulations across multiple settings
julia --project=. src/generate_all.jl N

# Example: 5 runs of every setting in all_simulations()
julia --project=. src/generate_all.jl 5

Analyzing Simulation Results

include("src/analyze.jl")
  • This script will populate data/results/sr_$BCL_$ISO with plots of the results.
  • Summary plots in data/results/summary
  • A DataFrame df is also created with all the grouped results: P(SCR) and starting Ca_NSR (final amount from prepace)