diff --git a/README.md b/README.md index 9cb4c1c..8056f37 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,7 @@ # flux-tools -Code and demos for running scripts on FLUX +This is a repo containing demos for how to get started with the University of Michigan FLUX HPC cluster and run some basic bioinformatics/microbiome scripts. + +You can access lessons at [http://deneflab.github.io/flux-tools/](http://deneflab.github.io/flux-tools/). + +This repo was created by @michberr. As of September 2016 updates to flux may not be reflected in the demos. + diff --git a/_includes/header.html b/_includes/header.html new file mode 100644 index 0000000..aca3695 --- /dev/null +++ b/_includes/header.html @@ -0,0 +1,12 @@ + + + + + + + + + + diff --git a/_includes/javascript.html b/_includes/javascript.html new file mode 100644 index 0000000..662c4a3 --- /dev/null +++ b/_includes/javascript.html @@ -0,0 +1,5 @@ + + + + diff --git a/_layouts/lesson.html b/_layouts/lesson.html new file mode 100644 index 0000000..03bd8ed --- /dev/null +++ b/_layouts/lesson.html @@ -0,0 +1,29 @@ +--- +--- + + + + {% if page.title %} + {{ page.title }} + {% endif %} + {% include header.html %} + + + +
+ +
+
+ + {% if page.title %} +

{{page.title}}

+ {% endif %} + {{content}} + +
+
+ +
+ {% include javascript.html %} + + diff --git a/_layouts/slides.html b/_layouts/slides.html new file mode 100644 index 0000000..ac05c98 --- /dev/null +++ b/_layouts/slides.html @@ -0,0 +1,60 @@ +--- +cdn: http://files.software-carpentry.org/cdn +--- + + + + + {{page.title}} + + + + + + + + + + + + +
+
+{{content}} +
+
+ + + + + + + + diff --git a/_layouts/workshop.html b/_layouts/workshop.html new file mode 100644 index 0000000..529db21 --- /dev/null +++ b/_layouts/workshop.html @@ -0,0 +1,42 @@ +--- +--- + + + + {% if page.title %} + {{ page.title }} + {% else %} + {{ page.venue }} + {% endif %} + {% include header.html %} + + + + + + +
+
+ {% include banner.html %} + +
+
+
+

A Data Carpentry Workshop

+

Organized by ...

+

{{page.venue}}

+ {% if page.address %}{{page.address}}
{% endif %} + {{page.humandate}} + {% if page.humantime %}
{{page.humantime}}{% endif %} +
+
+
+ + {{content}} + + {% include footer.html %} +
+
+ {% include javascript.html %} + + diff --git a/css/bootstrap/bootstrap-responsive.css b/css/bootstrap/bootstrap-responsive.css new file mode 100644 index 0000000..a3352d7 --- /dev/null +++ b/css/bootstrap/bootstrap-responsive.css @@ -0,0 +1,1092 @@ +/*! + * Bootstrap Responsive v2.2.2 + * + * Copyright 2012 Twitter, Inc + * Licensed under the Apache License v2.0 + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Designed and built with all the love in the world @twitter by @mdo and @fat. + */ + +@-ms-viewport { + width: device-width; +} + +.clearfix { + *zoom: 1; +} + +.clearfix:before, +.clearfix:after { + display: table; + line-height: 0; + content: ""; +} + +.clearfix:after { + clear: both; +} + +.hide-text { + font: 0/0 a; + color: transparent; + text-shadow: none; + background-color: transparent; + border: 0; +} + +.input-block-level { + display: block; + width: 100%; + min-height: 30px; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + +.hidden { + display: none; + visibility: hidden; +} + +.visible-phone { + display: none !important; +} + +.visible-tablet { + display: none !important; +} + +.hidden-desktop { + display: none !important; +} + +.visible-desktop { + display: inherit !important; +} + +@media (min-width: 768px) and (max-width: 979px) { + .hidden-desktop { + display: inherit !important; + } + .visible-desktop { + display: none !important ; + } + .visible-tablet { + display: inherit !important; + } + .hidden-tablet { + display: none !important; + } +} + +@media (max-width: 767px) { + .hidden-desktop { + display: inherit !important; + } + .visible-desktop { + display: none !important; + } + .visible-phone { + display: inherit !important; + } + .hidden-phone { + display: none !important; + } +} + +@media (min-width: 1200px) { + .row { + margin-left: -30px; + *zoom: 1; + } + .row:before, + .row:after { + display: table; + line-height: 0; + content: ""; + } + .row:after { + clear: both; + } + [class*="span"] { + float: left; + min-height: 1px; + margin-left: 30px; + } + .container, + .navbar-static-top .container, + .navbar-fixed-top .container, + .navbar-fixed-bottom .container { + width: 1170px; + } + .span12 { + width: 1170px; + } + .span11 { + width: 1070px; + } + .span10 { + width: 970px; + } + .span9 { + width: 870px; + } + .span8 { + width: 770px; + } + .span7 { + width: 670px; + } + .span6 { + width: 570px; + } + .span5 { + width: 470px; + } + .span4 { + width: 370px; + } + .span3 { + width: 270px; + } + .span2 { + width: 170px; + } + .span1 { + width: 70px; + } + .offset12 { + margin-left: 1230px; + } + .offset11 { + margin-left: 1130px; + } + .offset10 { + margin-left: 1030px; + } + .offset9 { + margin-left: 930px; + } + .offset8 { + margin-left: 830px; + } + .offset7 { + margin-left: 730px; + } + .offset6 { + margin-left: 630px; + } + .offset5 { + margin-left: 530px; + } + .offset4 { + margin-left: 430px; + } + .offset3 { + margin-left: 330px; + } + .offset2 { + margin-left: 230px; + } + .offset1 { + margin-left: 130px; + } + .row-fluid { + width: 100%; + *zoom: 1; + } + .row-fluid:before, + .row-fluid:after { + display: table; + line-height: 0; + content: ""; + } + .row-fluid:after { + clear: both; + } + .row-fluid [class*="span"] { + display: block; + float: left; + width: 100%; + min-height: 30px; + margin-left: 2.564102564102564%; + *margin-left: 2.5109110747408616%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .row-fluid [class*="span"]:first-child { + margin-left: 0; + } + .row-fluid .controls-row [class*="span"] + [class*="span"] { + margin-left: 2.564102564102564%; + } + .row-fluid .span12 { + width: 100%; + *width: 99.94680851063829%; + } + .row-fluid .span11 { + width: 91.45299145299145%; + *width: 91.39979996362975%; + } + .row-fluid .span10 { + width: 82.90598290598291%; + *width: 82.8527914166212%; + } + .row-fluid .span9 { + width: 74.35897435897436%; + *width: 74.30578286961266%; + } + .row-fluid .span8 { + width: 65.81196581196582%; + *width: 65.75877432260411%; + } + .row-fluid .span7 { + width: 57.26495726495726%; + *width: 57.21176577559556%; + } + .row-fluid .span6 { + width: 48.717948717948715%; + *width: 48.664757228587014%; + } + .row-fluid .span5 { + width: 40.17094017094017%; + *width: 40.11774868157847%; + } + .row-fluid .span4 { + width: 31.623931623931625%; + *width: 31.570740134569924%; + } + .row-fluid .span3 { + width: 23.076923076923077%; + *width: 23.023731587561375%; + } + .row-fluid .span2 { + width: 14.52991452991453%; + *width: 14.476723040552828%; + } + .row-fluid .span1 { + width: 5.982905982905983%; + *width: 5.929714493544281%; + } + .row-fluid .offset12 { + margin-left: 105.12820512820512%; + *margin-left: 105.02182214948171%; + } + .row-fluid .offset12:first-child { + margin-left: 102.56410256410257%; + *margin-left: 102.45771958537915%; + } + .row-fluid .offset11 { + margin-left: 96.58119658119658%; + *margin-left: 96.47481360247316%; + } + .row-fluid .offset11:first-child { + margin-left: 94.01709401709402%; + *margin-left: 93.91071103837061%; + } + .row-fluid .offset10 { + margin-left: 88.03418803418803%; + *margin-left: 87.92780505546462%; + } + .row-fluid .offset10:first-child { + margin-left: 85.47008547008548%; + *margin-left: 85.36370249136206%; + } + .row-fluid .offset9 { + margin-left: 79.48717948717949%; + *margin-left: 79.38079650845607%; + } + .row-fluid .offset9:first-child { + margin-left: 76.92307692307693%; + *margin-left: 76.81669394435352%; + } + .row-fluid .offset8 { + margin-left: 70.94017094017094%; + *margin-left: 70.83378796144753%; + } + .row-fluid .offset8:first-child { + margin-left: 68.37606837606839%; + *margin-left: 68.26968539734497%; + } + .row-fluid .offset7 { + margin-left: 62.393162393162385%; + *margin-left: 62.28677941443899%; + } + .row-fluid .offset7:first-child { + margin-left: 59.82905982905982%; + *margin-left: 59.72267685033642%; + } + .row-fluid .offset6 { + margin-left: 53.84615384615384%; + *margin-left: 53.739770867430444%; + } + .row-fluid .offset6:first-child { + margin-left: 51.28205128205128%; + *margin-left: 51.175668303327875%; + } + .row-fluid .offset5 { + margin-left: 45.299145299145295%; + *margin-left: 45.1927623204219%; + } + .row-fluid .offset5:first-child { + margin-left: 42.73504273504273%; + *margin-left: 42.62865975631933%; + } + .row-fluid .offset4 { + margin-left: 36.75213675213675%; + *margin-left: 36.645753773413354%; + } + .row-fluid .offset4:first-child { + margin-left: 34.18803418803419%; + *margin-left: 34.081651209310785%; + } + .row-fluid .offset3 { + margin-left: 28.205128205128204%; + *margin-left: 28.0987452264048%; + } + .row-fluid .offset3:first-child { + margin-left: 25.641025641025642%; + *margin-left: 25.53464266230224%; + } + .row-fluid .offset2 { + margin-left: 19.65811965811966%; + *margin-left: 19.551736679396257%; + } + .row-fluid .offset2:first-child { + margin-left: 17.094017094017094%; + *margin-left: 16.98763411529369%; + } + .row-fluid .offset1 { + margin-left: 11.11111111111111%; + *margin-left: 11.004728132387708%; + } + .row-fluid .offset1:first-child { + margin-left: 8.547008547008547%; + *margin-left: 8.440625568285142%; + } + input, + textarea, + .uneditable-input { + margin-left: 0; + } + .controls-row [class*="span"] + [class*="span"] { + margin-left: 30px; + } + input.span12, + textarea.span12, + .uneditable-input.span12 { + width: 1156px; + } + input.span11, + textarea.span11, + .uneditable-input.span11 { + width: 1056px; + } + input.span10, + textarea.span10, + .uneditable-input.span10 { + width: 956px; + } + input.span9, + textarea.span9, + .uneditable-input.span9 { + width: 856px; + } + input.span8, + textarea.span8, + .uneditable-input.span8 { + width: 756px; + } + input.span7, + textarea.span7, + .uneditable-input.span7 { + width: 656px; + } + input.span6, + textarea.span6, + .uneditable-input.span6 { + width: 556px; + } + input.span5, + textarea.span5, + .uneditable-input.span5 { + width: 456px; + } + input.span4, + textarea.span4, + .uneditable-input.span4 { + width: 356px; + } + input.span3, + textarea.span3, + .uneditable-input.span3 { + width: 256px; + } + input.span2, + textarea.span2, + .uneditable-input.span2 { + width: 156px; + } + input.span1, + textarea.span1, + .uneditable-input.span1 { + width: 56px; + } + .thumbnails { + margin-left: -30px; + } + .thumbnails > li { + margin-left: 30px; + } + .row-fluid .thumbnails { + margin-left: 0; + } +} + +@media (min-width: 768px) and (max-width: 979px) { + .row { + margin-left: -20px; + *zoom: 1; + } + .row:before, + .row:after { + display: table; + line-height: 0; + content: ""; + } + .row:after { + clear: both; + } + [class*="span"] { + float: left; + min-height: 1px; + margin-left: 20px; + } + .container, + .navbar-static-top .container, + .navbar-fixed-top .container, + .navbar-fixed-bottom .container { + width: 724px; + } + .span12 { + width: 724px; + } + .span11 { + width: 662px; + } + .span10 { + width: 600px; + } + .span9 { + width: 538px; + } + .span8 { + width: 476px; + } + .span7 { + width: 414px; + } + .span6 { + width: 352px; + } + .span5 { + width: 290px; + } + .span4 { + width: 228px; + } + .span3 { + width: 166px; + } + .span2 { + width: 104px; + } + .span1 { + width: 42px; + } + .offset12 { + margin-left: 764px; + } + .offset11 { + margin-left: 702px; + } + .offset10 { + margin-left: 640px; + } + .offset9 { + margin-left: 578px; + } + .offset8 { + margin-left: 516px; + } + .offset7 { + margin-left: 454px; + } + .offset6 { + margin-left: 392px; + } + .offset5 { + margin-left: 330px; + } + .offset4 { + margin-left: 268px; + } + .offset3 { + margin-left: 206px; + } + .offset2 { + margin-left: 144px; + } + .offset1 { + margin-left: 82px; + } + .row-fluid { + width: 100%; + *zoom: 1; + } + .row-fluid:before, + .row-fluid:after { + display: table; + line-height: 0; + content: ""; + } + .row-fluid:after { + clear: both; + } + .row-fluid [class*="span"] { + display: block; + float: left; + width: 100%; + min-height: 30px; + margin-left: 2.7624309392265194%; + *margin-left: 2.709239449864817%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .row-fluid [class*="span"]:first-child { + margin-left: 0; + } + .row-fluid .controls-row [class*="span"] + [class*="span"] { + margin-left: 2.7624309392265194%; + } + .row-fluid .span12 { + width: 100%; + *width: 99.94680851063829%; + } + .row-fluid .span11 { + width: 91.43646408839778%; + *width: 91.38327259903608%; + } + .row-fluid .span10 { + width: 82.87292817679558%; + *width: 82.81973668743387%; + } + .row-fluid .span9 { + width: 74.30939226519337%; + *width: 74.25620077583166%; + } + .row-fluid .span8 { + width: 65.74585635359117%; + *width: 65.69266486422946%; + } + .row-fluid .span7 { + width: 57.18232044198895%; + *width: 57.12912895262725%; + } + .row-fluid .span6 { + width: 48.61878453038674%; + *width: 48.56559304102504%; + } + .row-fluid .span5 { + width: 40.05524861878453%; + *width: 40.00205712942283%; + } + .row-fluid .span4 { + width: 31.491712707182323%; + *width: 31.43852121782062%; + } + .row-fluid .span3 { + width: 22.92817679558011%; + *width: 22.87498530621841%; + } + .row-fluid .span2 { + width: 14.3646408839779%; + *width: 14.311449394616199%; + } + .row-fluid .span1 { + width: 5.801104972375691%; + *width: 5.747913483013988%; + } + .row-fluid .offset12 { + margin-left: 105.52486187845304%; + *margin-left: 105.41847889972962%; + } + .row-fluid .offset12:first-child { + margin-left: 102.76243093922652%; + *margin-left: 102.6560479605031%; + } + .row-fluid .offset11 { + margin-left: 96.96132596685082%; + *margin-left: 96.8549429881274%; + } + .row-fluid .offset11:first-child { + margin-left: 94.1988950276243%; + *margin-left: 94.09251204890089%; + } + .row-fluid .offset10 { + margin-left: 88.39779005524862%; + *margin-left: 88.2914070765252%; + } + .row-fluid .offset10:first-child { + margin-left: 85.6353591160221%; + *margin-left: 85.52897613729868%; + } + .row-fluid .offset9 { + margin-left: 79.8342541436464%; + *margin-left: 79.72787116492299%; + } + .row-fluid .offset9:first-child { + margin-left: 77.07182320441989%; + *margin-left: 76.96544022569647%; + } + .row-fluid .offset8 { + margin-left: 71.2707182320442%; + *margin-left: 71.16433525332079%; + } + .row-fluid .offset8:first-child { + margin-left: 68.50828729281768%; + *margin-left: 68.40190431409427%; + } + .row-fluid .offset7 { + margin-left: 62.70718232044199%; + *margin-left: 62.600799341718584%; + } + .row-fluid .offset7:first-child { + margin-left: 59.94475138121547%; + *margin-left: 59.838368402492065%; + } + .row-fluid .offset6 { + margin-left: 54.14364640883978%; + *margin-left: 54.037263430116376%; + } + .row-fluid .offset6:first-child { + margin-left: 51.38121546961326%; + *margin-left: 51.27483249088986%; + } + .row-fluid .offset5 { + margin-left: 45.58011049723757%; + *margin-left: 45.47372751851417%; + } + .row-fluid .offset5:first-child { + margin-left: 42.81767955801105%; + *margin-left: 42.71129657928765%; + } + .row-fluid .offset4 { + margin-left: 37.01657458563536%; + *margin-left: 36.91019160691196%; + } + .row-fluid .offset4:first-child { + margin-left: 34.25414364640884%; + *margin-left: 34.14776066768544%; + } + .row-fluid .offset3 { + margin-left: 28.45303867403315%; + *margin-left: 28.346655695309746%; + } + .row-fluid .offset3:first-child { + margin-left: 25.69060773480663%; + *margin-left: 25.584224756083227%; + } + .row-fluid .offset2 { + margin-left: 19.88950276243094%; + *margin-left: 19.783119783707537%; + } + .row-fluid .offset2:first-child { + margin-left: 17.12707182320442%; + *margin-left: 17.02068884448102%; + } + .row-fluid .offset1 { + margin-left: 11.32596685082873%; + *margin-left: 11.219583872105325%; + } + .row-fluid .offset1:first-child { + margin-left: 8.56353591160221%; + *margin-left: 8.457152932878806%; + } + input, + textarea, + .uneditable-input { + margin-left: 0; + } + .controls-row [class*="span"] + [class*="span"] { + margin-left: 20px; + } + input.span12, + textarea.span12, + .uneditable-input.span12 { + width: 710px; + } + input.span11, + textarea.span11, + .uneditable-input.span11 { + width: 648px; + } + input.span10, + textarea.span10, + .uneditable-input.span10 { + width: 586px; + } + input.span9, + textarea.span9, + .uneditable-input.span9 { + width: 524px; + } + input.span8, + textarea.span8, + .uneditable-input.span8 { + width: 462px; + } + input.span7, + textarea.span7, + .uneditable-input.span7 { + width: 400px; + } + input.span6, + textarea.span6, + .uneditable-input.span6 { + width: 338px; + } + input.span5, + textarea.span5, + .uneditable-input.span5 { + width: 276px; + } + input.span4, + textarea.span4, + .uneditable-input.span4 { + width: 214px; + } + input.span3, + textarea.span3, + .uneditable-input.span3 { + width: 152px; + } + input.span2, + textarea.span2, + .uneditable-input.span2 { + width: 90px; + } + input.span1, + textarea.span1, + .uneditable-input.span1 { + width: 28px; + } +} + +@media (max-width: 767px) { + body { + padding-right: 20px; + padding-left: 20px; + } + .navbar-fixed-top, + .navbar-fixed-bottom, + .navbar-static-top { + margin-right: -20px; + margin-left: -20px; + } + .container-fluid { + padding: 0; + } + .dl-horizontal dt { + float: none; + width: auto; + clear: none; + text-align: left; + } + .dl-horizontal dd { + margin-left: 0; + } + .container { + width: auto; + } + .row-fluid { + width: 100%; + } + .row, + .thumbnails { + margin-left: 0; + } + .thumbnails > li { + float: none; + margin-left: 0; + } + [class*="span"], + .uneditable-input[class*="span"], + .row-fluid [class*="span"] { + display: block; + float: none; + width: 100%; + margin-left: 0; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .span12, + .row-fluid .span12 { + width: 100%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .row-fluid [class*="offset"]:first-child { + margin-left: 0; + } + .input-large, + .input-xlarge, + .input-xxlarge, + input[class*="span"], + select[class*="span"], + textarea[class*="span"], + .uneditable-input { + display: block; + width: 100%; + min-height: 30px; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + } + .input-prepend input, + .input-append input, + .input-prepend input[class*="span"], + .input-append input[class*="span"] { + display: inline-block; + width: auto; + } + .controls-row [class*="span"] + [class*="span"] { + margin-left: 0; + } + .modal { + position: fixed; + top: 20px; + right: 20px; + left: 20px; + width: auto; + margin: 0; + } + .modal.fade { + top: -100px; + } + .modal.fade.in { + top: 20px; + } +} + +@media (max-width: 480px) { + .nav-collapse { + -webkit-transform: translate3d(0, 0, 0); + } + .page-header h1 small { + display: block; + line-height: 20px; + } + input[type="checkbox"], + input[type="radio"] { + border: 1px solid #ccc; + } + .form-horizontal .control-label { + float: none; + width: auto; + padding-top: 0; + text-align: left; + } + .form-horizontal .controls { + margin-left: 0; + } + .form-horizontal .control-list { + padding-top: 0; + } + .form-horizontal .form-actions { + padding-right: 10px; + padding-left: 10px; + } + .media .pull-left, + .media .pull-right { + display: block; + float: none; + margin-bottom: 10px; + } + .media-object { + margin-right: 0; + margin-left: 0; + } + .modal { + top: 10px; + right: 10px; + left: 10px; + } + .modal-header .close { + padding: 10px; + margin: -10px; + } + .carousel-caption { + position: static; + } +} + +@media (max-width: 979px) { + body { + padding-top: 0; + } + .navbar-fixed-top, + .navbar-fixed-bottom { + position: static; + } + .navbar-fixed-top { + margin-bottom: 20px; + } + .navbar-fixed-bottom { + margin-top: 20px; + } + .navbar-fixed-top .navbar-inner, + .navbar-fixed-bottom .navbar-inner { + padding: 5px; + } + .navbar .container { + width: auto; + padding: 0; + } + .navbar .brand { + padding-right: 10px; + padding-left: 10px; + margin: 0 0 0 -5px; + } + .nav-collapse { + clear: both; + } + .nav-collapse .nav { + float: none; + margin: 0 0 10px; + } + .nav-collapse .nav > li { + float: none; + } + .nav-collapse .nav > li > a { + margin-bottom: 2px; + } + .nav-collapse .nav > .divider-vertical { + display: none; + } + .nav-collapse .nav .nav-header { + color: #777777; + text-shadow: none; + } + .nav-collapse .nav > li > a, + .nav-collapse .dropdown-menu a { + padding: 9px 15px; + font-weight: bold; + color: #777777; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; + } + .nav-collapse .btn { + padding: 4px 10px 4px; + font-weight: normal; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + } + .nav-collapse .dropdown-menu li + li a { + margin-bottom: 2px; + } + .nav-collapse .nav > li > a:hover, + .nav-collapse .dropdown-menu a:hover { + background-color: #f2f2f2; + } + .navbar-inverse .nav-collapse .nav > li > a, + .navbar-inverse .nav-collapse .dropdown-menu a { + color: #999999; + } + .navbar-inverse .nav-collapse .nav > li > a:hover, + .navbar-inverse .nav-collapse .dropdown-menu a:hover { + background-color: #111111; + } + .nav-collapse.in .btn-group { + padding: 0; + margin-top: 5px; + } + .nav-collapse .dropdown-menu { + position: static; + top: auto; + left: auto; + display: none; + float: none; + max-width: none; + padding: 0; + margin: 0 15px; + background-color: transparent; + border: none; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; + -webkit-box-shadow: none; + -moz-box-shadow: none; + box-shadow: none; + } + .nav-collapse .open > .dropdown-menu { + display: block; + } + .nav-collapse .dropdown-menu:before, + .nav-collapse .dropdown-menu:after { + display: none; + } + .nav-collapse .dropdown-menu .divider { + display: none; + } + .nav-collapse .nav > li > .dropdown-menu:before, + .nav-collapse .nav > li > .dropdown-menu:after { + display: none; + } + .nav-collapse .navbar-form, + .nav-collapse .navbar-search { + float: none; + padding: 10px 15px; + margin: 10px 0; + border-top: 1px solid #f2f2f2; + border-bottom: 1px solid #f2f2f2; + -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); + -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); + box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1); + } + .navbar-inverse .nav-collapse .navbar-form, + .navbar-inverse .nav-collapse .navbar-search { + border-top-color: #111111; + border-bottom-color: #111111; + } + .navbar .nav-collapse .nav.pull-right { + float: none; + margin-left: 0; + } + .nav-collapse, + .nav-collapse.collapse { + height: 0; + overflow: hidden; + } + .navbar .btn-navbar { + display: block; + } + .navbar-static .navbar-inner { + padding-right: 10px; + padding-left: 10px; + } +} + +@media (min-width: 980px) { + .nav-collapse.collapse { + height: auto !important; + overflow: visible !important; + } +} diff --git a/css/bootstrap/bootstrap.css b/css/bootstrap/bootstrap.css new file mode 100644 index 0000000..8e4b383 --- /dev/null +++ b/css/bootstrap/bootstrap.css @@ -0,0 +1,6039 @@ +/*! + * Bootstrap v2.2.2 + * + * Copyright 2012 Twitter, Inc + * Licensed under the Apache License v2.0 + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Designed and built with all the love in the world @twitter by @mdo and @fat. + */ + +article, +aside, +details, +figcaption, +figure, +footer, +header, +hgroup, +nav, +section { + display: block; +} + +audio, +canvas, +video { + display: inline-block; + *display: inline; + *zoom: 1; +} + +audio:not([controls]) { + display: none; +} + +html { + font-size: 100%; + -webkit-text-size-adjust: 100%; + -ms-text-size-adjust: 100%; +} + +a:focus { + outline: thin dotted #333; + outline: 5px auto -webkit-focus-ring-color; + outline-offset: -2px; +} + +a:hover, +a:active { + outline: 0; +} + +sub, +sup { + position: relative; + font-size: 75%; + line-height: 0; + vertical-align: baseline; +} + +sup { + top: -0.5em; +} + +sub { + bottom: -0.25em; +} + +img { + width: auto\9; + height: auto; + max-width: 100%; + vertical-align: middle; + border: 0; + -ms-interpolation-mode: bicubic; +} + +#map_canvas img, +.google-maps img { + max-width: none; +} + +button, +input, +select, +textarea { + margin: 0; + font-size: 100%; + vertical-align: middle; +} + +button, +input { + *overflow: visible; + line-height: normal; +} + +button::-moz-focus-inner, +input::-moz-focus-inner { + padding: 0; + border: 0; +} + +button, +html input[type="button"], +input[type="reset"], +input[type="submit"] { + cursor: pointer; + -webkit-appearance: button; +} + +label, +select, +button, +input[type="button"], +input[type="reset"], +input[type="submit"], +input[type="radio"], +input[type="checkbox"] { + cursor: pointer; +} + +input[type="search"] { + -webkit-box-sizing: content-box; + -moz-box-sizing: content-box; + box-sizing: content-box; + -webkit-appearance: textfield; +} + +input[type="search"]::-webkit-search-decoration, +input[type="search"]::-webkit-search-cancel-button { + -webkit-appearance: none; +} + +textarea { + overflow: auto; + vertical-align: top; +} + +@media print { + * { + color: #000 !important; + text-shadow: none !important; + background: transparent !important; + box-shadow: none !important; + } + a, + a:visited { + text-decoration: underline; + } + a[href]:after { + content: " (" attr(href) ")"; + } + abbr[title]:after { + content: " (" attr(title) ")"; + } + .ir a:after, + a[href^="javascript:"]:after, + a[href^="#"]:after { + content: ""; + } + pre, + blockquote { + border: 1px solid #999; + page-break-inside: avoid; + } + thead { + display: table-header-group; + } + tr, + img { + page-break-inside: avoid; + } + img { + max-width: 100% !important; + } + @page { + margin: 0.5cm; + } + p, + h2, + h3 { + orphans: 3; + widows: 3; + } + h2, + h3 { + page-break-after: avoid; + } +} + +.clearfix { + *zoom: 1; +} + +.clearfix:before, +.clearfix:after { + display: table; + line-height: 0; + content: ""; +} + +.clearfix:after { + clear: both; +} + +.hide-text { + font: 0/0 a; + color: transparent; + text-shadow: none; + background-color: transparent; + border: 0; +} + +.input-block-level { + display: block; + width: 100%; + min-height: 30px; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + +body { + margin: 0; + font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; + font-size: 14px; + line-height: 20px; + color: #333333; + background-color: #ffffff; +} + +a { + color: #0088cc; + text-decoration: none; +} + +a:hover { + color: #005580; + text-decoration: underline; +} + +.img-rounded { + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + +.img-polaroid { + padding: 4px; + background-color: #fff; + border: 1px solid #ccc; + border: 1px solid rgba(0, 0, 0, 0.2); + -webkit-box-shadow: 0 1px 3px rgba(0, 0, 0, 0.1); + -moz-box-shadow: 0 1px 3px rgba(0, 0, 0, 0.1); + box-shadow: 0 1px 3px rgba(0, 0, 0, 0.1); +} + +.img-circle { + -webkit-border-radius: 500px; + -moz-border-radius: 500px; + border-radius: 500px; +} + +.row { + margin-left: -20px; + *zoom: 1; +} + +.row:before, +.row:after { + display: table; + line-height: 0; + content: ""; +} + +.row:after { + clear: both; +} + +[class*="span"] { + float: left; + min-height: 1px; + margin-left: 20px; +} + +.container, +.navbar-static-top .container, +.navbar-fixed-top .container, +.navbar-fixed-bottom .container { + width: 940px; +} + +.span12 { + width: 940px; +} + +.span11 { + width: 860px; +} + +.span10 { + width: 780px; +} + +.span9 { + width: 700px; +} + +.span8 { + width: 620px; +} + +.span7 { + width: 540px; +} + +.span6 { + width: 460px; +} + +.span5 { + width: 380px; +} + +.span4 { + width: 300px; +} + +.span3 { + width: 220px; +} + +.span2 { + width: 140px; +} + +.span1 { + width: 60px; +} + +.offset12 { + margin-left: 980px; +} + +.offset11 { + margin-left: 900px; +} + +.offset10 { + margin-left: 820px; +} + +.offset9 { + margin-left: 740px; +} + +.offset8 { + margin-left: 660px; +} + +.offset7 { + margin-left: 580px; +} + +.offset6 { + margin-left: 500px; +} + +.offset5 { + margin-left: 420px; +} + +.offset4 { + margin-left: 340px; +} + +.offset3 { + margin-left: 260px; +} + +.offset2 { + margin-left: 180px; +} + +.offset1 { + margin-left: 100px; +} + +.row-fluid { + width: 100%; + *zoom: 1; +} + +.row-fluid:before, +.row-fluid:after { + display: table; + line-height: 0; + content: ""; +} + +.row-fluid:after { + clear: both; +} + +.row-fluid [class*="span"] { + display: block; + float: left; + width: 100%; + min-height: 30px; + margin-left: 2.127659574468085%; + *margin-left: 2.074468085106383%; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + +.row-fluid [class*="span"]:first-child { + margin-left: 0; +} + +.row-fluid .controls-row [class*="span"] + [class*="span"] { + margin-left: 2.127659574468085%; +} + +.row-fluid .span12 { + width: 100%; + *width: 99.94680851063829%; +} + +.row-fluid .span11 { + width: 91.48936170212765%; + *width: 91.43617021276594%; +} + +.row-fluid .span10 { + width: 82.97872340425532%; + *width: 82.92553191489361%; +} + +.row-fluid .span9 { + width: 74.46808510638297%; + *width: 74.41489361702126%; +} + +.row-fluid .span8 { + width: 65.95744680851064%; + *width: 65.90425531914893%; +} + +.row-fluid .span7 { + width: 57.44680851063829%; + *width: 57.39361702127659%; +} + +.row-fluid .span6 { + width: 48.93617021276595%; + *width: 48.88297872340425%; +} + +.row-fluid .span5 { + width: 40.42553191489362%; + *width: 40.37234042553192%; +} + +.row-fluid .span4 { + width: 31.914893617021278%; + *width: 31.861702127659576%; +} + +.row-fluid .span3 { + width: 23.404255319148934%; + *width: 23.351063829787233%; +} + +.row-fluid .span2 { + width: 14.893617021276595%; + *width: 14.840425531914894%; +} + +.row-fluid .span1 { + width: 6.382978723404255%; + *width: 6.329787234042553%; +} + +.row-fluid .offset12 { + margin-left: 104.25531914893617%; + *margin-left: 104.14893617021275%; +} + +.row-fluid .offset12:first-child { + margin-left: 102.12765957446808%; + *margin-left: 102.02127659574467%; +} + +.row-fluid .offset11 { + margin-left: 95.74468085106382%; + *margin-left: 95.6382978723404%; +} + +.row-fluid .offset11:first-child { + margin-left: 93.61702127659574%; + *margin-left: 93.51063829787232%; +} + +.row-fluid .offset10 { + margin-left: 87.23404255319149%; + *margin-left: 87.12765957446807%; +} + +.row-fluid .offset10:first-child { + margin-left: 85.1063829787234%; + *margin-left: 84.99999999999999%; +} + +.row-fluid .offset9 { + margin-left: 78.72340425531914%; + *margin-left: 78.61702127659572%; +} + +.row-fluid .offset9:first-child { + margin-left: 76.59574468085106%; + *margin-left: 76.48936170212764%; +} + +.row-fluid .offset8 { + margin-left: 70.2127659574468%; + *margin-left: 70.10638297872339%; +} + +.row-fluid .offset8:first-child { + margin-left: 68.08510638297872%; + *margin-left: 67.9787234042553%; +} + +.row-fluid .offset7 { + margin-left: 61.70212765957446%; + *margin-left: 61.59574468085106%; +} + +.row-fluid .offset7:first-child { + margin-left: 59.574468085106375%; + *margin-left: 59.46808510638297%; +} + +.row-fluid .offset6 { + margin-left: 53.191489361702125%; + *margin-left: 53.085106382978715%; +} + +.row-fluid .offset6:first-child { + margin-left: 51.063829787234035%; + *margin-left: 50.95744680851063%; +} + +.row-fluid .offset5 { + margin-left: 44.68085106382979%; + *margin-left: 44.57446808510638%; +} + +.row-fluid .offset5:first-child { + margin-left: 42.5531914893617%; + *margin-left: 42.4468085106383%; +} + +.row-fluid .offset4 { + margin-left: 36.170212765957444%; + *margin-left: 36.06382978723405%; +} + +.row-fluid .offset4:first-child { + margin-left: 34.04255319148936%; + *margin-left: 33.93617021276596%; +} + +.row-fluid .offset3 { + margin-left: 27.659574468085104%; + *margin-left: 27.5531914893617%; +} + +.row-fluid .offset3:first-child { + margin-left: 25.53191489361702%; + *margin-left: 25.425531914893618%; +} + +.row-fluid .offset2 { + margin-left: 19.148936170212764%; + *margin-left: 19.04255319148936%; +} + +.row-fluid .offset2:first-child { + margin-left: 17.02127659574468%; + *margin-left: 16.914893617021278%; +} + +.row-fluid .offset1 { + margin-left: 10.638297872340425%; + *margin-left: 10.53191489361702%; +} + +.row-fluid .offset1:first-child { + margin-left: 8.51063829787234%; + *margin-left: 8.404255319148938%; +} + +[class*="span"].hide, +.row-fluid [class*="span"].hide { + display: none; +} + +[class*="span"].pull-right, +.row-fluid [class*="span"].pull-right { + float: right; +} + +.container { + margin-right: auto; + margin-left: auto; + *zoom: 1; +} + +.container:before, +.container:after { + display: table; + line-height: 0; + content: ""; +} + +.container:after { + clear: both; +} + +.container-fluid { + padding-right: 20px; + padding-left: 20px; + *zoom: 1; +} + +.container-fluid:before, +.container-fluid:after { + display: table; + line-height: 0; + content: ""; +} + +.container-fluid:after { + clear: both; +} + +p { + margin: 0 0 10px; +} + +.lead { + margin-bottom: 20px; + font-size: 21px; + font-weight: 200; + line-height: 30px; +} + +small { + font-size: 85%; +} + +strong { + font-weight: bold; +} + +em { + font-style: italic; +} + +cite { + font-style: normal; +} + +.muted { + color: #999999; +} + +a.muted:hover { + color: #808080; +} + +.text-warning { + color: #c09853; +} + +a.text-warning:hover { + color: #a47e3c; +} + +.text-error { + color: #b94a48; +} + +a.text-error:hover { + color: #953b39; +} + +.text-info { + color: #3a87ad; +} + +a.text-info:hover { + color: #2d6987; +} + +.text-success { + color: #468847; +} + +a.text-success:hover { + color: #356635; +} + +h1, +h2, +h3, +h4, +h5, +h6 { + margin: 10px 0; + font-family: inherit; + font-weight: bold; + line-height: 20px; + color: inherit; + text-rendering: optimizelegibility; +} + +h1 small, +h2 small, +h3 small, +h4 small, +h5 small, +h6 small { + font-weight: normal; + line-height: 1; + color: #999999; +} + +h1, +h2, +h3 { + line-height: 40px; +} + +h1 { + font-size: 38.5px; +} + +h2 { + font-size: 31.5px; +} + +h3 { + font-size: 24.5px; +} + +h4 { + font-size: 17.5px; +} + +h5 { + font-size: 14px; +} + +h6 { + font-size: 11.9px; +} + +h1 small { + font-size: 24.5px; +} + +h2 small { + font-size: 17.5px; +} + +h3 small { + font-size: 14px; +} + +h4 small { + font-size: 14px; +} + +.page-header { + padding-bottom: 9px; + margin: 20px 0 30px; + border-bottom: 1px solid #eeeeee; +} + +ul, +ol { + padding: 0; + margin: 0 0 10px 25px; +} + +ul ul, +ul ol, +ol ol, +ol ul { + margin-bottom: 0; +} + +li { + line-height: 20px; +} + +ul.unstyled, +ol.unstyled { + margin-left: 0; + list-style: none; +} + +ul.inline, +ol.inline { + margin-left: 0; + list-style: none; +} + +ul.inline > li, +ol.inline > li { + display: inline-block; + padding-right: 5px; + padding-left: 5px; +} + +dl { + margin-bottom: 20px; +} + +dt, +dd { + line-height: 20px; +} + +dt { + font-weight: bold; +} + +dd { + margin-left: 10px; +} + +.dl-horizontal { + *zoom: 1; +} + +.dl-horizontal:before, +.dl-horizontal:after { + display: table; + line-height: 0; + content: ""; +} + +.dl-horizontal:after { + clear: both; +} + +.dl-horizontal dt { + float: left; + width: 160px; + overflow: hidden; + clear: left; + text-align: right; + text-overflow: ellipsis; + white-space: nowrap; +} + +.dl-horizontal dd { + margin-left: 180px; +} + +hr { + margin: 20px 0; + border: 0; + border-top: 1px solid #eeeeee; + border-bottom: 1px solid #ffffff; +} + +abbr[title], +abbr[data-original-title] { + cursor: help; + border-bottom: 1px dotted #999999; +} + +abbr.initialism { + font-size: 90%; + text-transform: uppercase; +} + +blockquote { + padding: 0 0 0 15px; + margin: 0 0 20px; + border-left: 5px solid #eeeeee; +} + +blockquote p { + margin-bottom: 0; + font-size: 16px; + font-weight: 300; + line-height: 25px; +} + +blockquote small { + display: block; + line-height: 20px; + color: #999999; +} + +blockquote small:before { + content: '\2014 \00A0'; +} + +blockquote.pull-right { + float: right; + padding-right: 15px; + padding-left: 0; + border-right: 5px solid #eeeeee; + border-left: 0; +} + +blockquote.pull-right p, +blockquote.pull-right small { + text-align: right; +} + +blockquote.pull-right small:before { + content: ''; +} + +blockquote.pull-right small:after { + content: '\00A0 \2014'; +} + +q:before, +q:after, +blockquote:before, +blockquote:after { + content: ""; +} + +address { + display: block; + margin-bottom: 20px; + font-style: normal; + line-height: 20px; +} + +code, +pre { + padding: 0 3px 2px; + font-family: Monaco, Menlo, Consolas, "Courier New", monospace; + font-size: 12px; + color: #333333; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +code { + padding: 2px 4px; + color: #d14; + white-space: nowrap; + background-color: #f7f7f9; + border: 1px solid #e1e1e8; +} + +pre { + display: block; + padding: 9.5px; + margin: 0 0 10px; + font-size: 13px; + line-height: 20px; + word-break: break-all; + word-wrap: break-word; + white-space: pre; + white-space: pre-wrap; + background-color: #f5f5f5; + border: 1px solid #ccc; + border: 1px solid rgba(0, 0, 0, 0.15); + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +pre.prettyprint { + margin-bottom: 20px; +} + +pre code { + padding: 0; + color: inherit; + white-space: pre; + white-space: pre-wrap; + background-color: transparent; + border: 0; +} + +.pre-scrollable { + max-height: 340px; + overflow-y: scroll; +} + +form { + margin: 0 0 20px; +} + +fieldset { + padding: 0; + margin: 0; + border: 0; +} + +legend { + display: block; + width: 100%; + padding: 0; + margin-bottom: 20px; + font-size: 21px; + line-height: 40px; + color: #333333; + border: 0; + border-bottom: 1px solid #e5e5e5; +} + +legend small { + font-size: 15px; + color: #999999; +} + +label, +input, +button, +select, +textarea { + font-size: 14px; + font-weight: normal; + line-height: 20px; +} + +input, +button, +select, +textarea { + font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; +} + +label { + display: block; + margin-bottom: 5px; +} + +select, +textarea, +input[type="text"], +input[type="password"], +input[type="datetime"], +input[type="datetime-local"], +input[type="date"], +input[type="month"], +input[type="time"], +input[type="week"], +input[type="number"], +input[type="email"], +input[type="url"], +input[type="search"], +input[type="tel"], +input[type="color"], +.uneditable-input { + display: inline-block; + height: 20px; + padding: 4px 6px; + margin-bottom: 10px; + font-size: 14px; + line-height: 20px; + color: #555555; + vertical-align: middle; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +input, +textarea, +.uneditable-input { + width: 206px; +} + +textarea { + height: auto; +} + +textarea, +input[type="text"], +input[type="password"], +input[type="datetime"], +input[type="datetime-local"], +input[type="date"], +input[type="month"], +input[type="time"], +input[type="week"], +input[type="number"], +input[type="email"], +input[type="url"], +input[type="search"], +input[type="tel"], +input[type="color"], +.uneditable-input { + background-color: #ffffff; + border: 1px solid #cccccc; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -webkit-transition: border linear 0.2s, box-shadow linear 0.2s; + -moz-transition: border linear 0.2s, box-shadow linear 0.2s; + -o-transition: border linear 0.2s, box-shadow linear 0.2s; + transition: border linear 0.2s, box-shadow linear 0.2s; +} + +textarea:focus, +input[type="text"]:focus, +input[type="password"]:focus, +input[type="datetime"]:focus, +input[type="datetime-local"]:focus, +input[type="date"]:focus, +input[type="month"]:focus, +input[type="time"]:focus, +input[type="week"]:focus, +input[type="number"]:focus, +input[type="email"]:focus, +input[type="url"]:focus, +input[type="search"]:focus, +input[type="tel"]:focus, +input[type="color"]:focus, +.uneditable-input:focus { + border-color: rgba(82, 168, 236, 0.8); + outline: 0; + outline: thin dotted \9; + /* IE6-9 */ + + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); +} + +input[type="radio"], +input[type="checkbox"] { + margin: 4px 0 0; + margin-top: 1px \9; + *margin-top: 0; + line-height: normal; +} + +input[type="file"], +input[type="image"], +input[type="submit"], +input[type="reset"], +input[type="button"], +input[type="radio"], +input[type="checkbox"] { + width: auto; +} + +select, +input[type="file"] { + height: 30px; + /* In IE7, the height of the select element cannot be changed by height, only font-size */ + + *margin-top: 4px; + /* For IE7, add top margin to align select with labels */ + + line-height: 30px; +} + +select { + width: 220px; + background-color: #ffffff; + border: 1px solid #cccccc; +} + +select[multiple], +select[size] { + height: auto; +} + +select:focus, +input[type="file"]:focus, +input[type="radio"]:focus, +input[type="checkbox"]:focus { + outline: thin dotted #333; + outline: 5px auto -webkit-focus-ring-color; + outline-offset: -2px; +} + +.uneditable-input, +.uneditable-textarea { + color: #999999; + cursor: not-allowed; + background-color: #fcfcfc; + border-color: #cccccc; + -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025); + -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025); + box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025); +} + +.uneditable-input { + overflow: hidden; + white-space: nowrap; +} + +.uneditable-textarea { + width: auto; + height: auto; +} + +input:-moz-placeholder, +textarea:-moz-placeholder { + color: #999999; +} + +input:-ms-input-placeholder, +textarea:-ms-input-placeholder { + color: #999999; +} + +input::-webkit-input-placeholder, +textarea::-webkit-input-placeholder { + color: #999999; +} + +.radio, +.checkbox { + min-height: 20px; + padding-left: 20px; +} + +.radio input[type="radio"], +.checkbox input[type="checkbox"] { + float: left; + margin-left: -20px; +} + +.controls > .radio:first-child, +.controls > .checkbox:first-child { + padding-top: 5px; +} + +.radio.inline, +.checkbox.inline { + display: inline-block; + padding-top: 5px; + margin-bottom: 0; + vertical-align: middle; +} + +.radio.inline + .radio.inline, +.checkbox.inline + .checkbox.inline { + margin-left: 10px; +} + +.input-mini { + width: 60px; +} + +.input-small { + width: 90px; +} + +.input-medium { + width: 150px; +} + +.input-large { + width: 210px; +} + +.input-xlarge { + width: 270px; +} + +.input-xxlarge { + width: 530px; +} + +input[class*="span"], +select[class*="span"], +textarea[class*="span"], +.uneditable-input[class*="span"], +.row-fluid input[class*="span"], +.row-fluid select[class*="span"], +.row-fluid textarea[class*="span"], +.row-fluid .uneditable-input[class*="span"] { + float: none; + margin-left: 0; +} + +.input-append input[class*="span"], +.input-append .uneditable-input[class*="span"], +.input-prepend input[class*="span"], +.input-prepend .uneditable-input[class*="span"], +.row-fluid input[class*="span"], +.row-fluid select[class*="span"], +.row-fluid textarea[class*="span"], +.row-fluid .uneditable-input[class*="span"], +.row-fluid .input-prepend [class*="span"], +.row-fluid .input-append [class*="span"] { + display: inline-block; +} + +input, +textarea, +.uneditable-input { + margin-left: 0; +} + +.controls-row [class*="span"] + [class*="span"] { + margin-left: 20px; +} + +input.span12, +textarea.span12, +.uneditable-input.span12 { + width: 926px; +} + +input.span11, +textarea.span11, +.uneditable-input.span11 { + width: 846px; +} + +input.span10, +textarea.span10, +.uneditable-input.span10 { + width: 766px; +} + +input.span9, +textarea.span9, +.uneditable-input.span9 { + width: 686px; +} + +input.span8, +textarea.span8, +.uneditable-input.span8 { + width: 606px; +} + +input.span7, +textarea.span7, +.uneditable-input.span7 { + width: 526px; +} + +input.span6, +textarea.span6, +.uneditable-input.span6 { + width: 446px; +} + +input.span5, +textarea.span5, +.uneditable-input.span5 { + width: 366px; +} + +input.span4, +textarea.span4, +.uneditable-input.span4 { + width: 286px; +} + +input.span3, +textarea.span3, +.uneditable-input.span3 { + width: 206px; +} + +input.span2, +textarea.span2, +.uneditable-input.span2 { + width: 126px; +} + +input.span1, +textarea.span1, +.uneditable-input.span1 { + width: 46px; +} + +.controls-row { + *zoom: 1; +} + +.controls-row:before, +.controls-row:after { + display: table; + line-height: 0; + content: ""; +} + +.controls-row:after { + clear: both; +} + +.controls-row [class*="span"], +.row-fluid .controls-row [class*="span"] { + float: left; +} + +.controls-row .checkbox[class*="span"], +.controls-row .radio[class*="span"] { + padding-top: 5px; +} + +input[disabled], +select[disabled], +textarea[disabled], +input[readonly], +select[readonly], +textarea[readonly] { + cursor: not-allowed; + background-color: #eeeeee; +} + +input[type="radio"][disabled], +input[type="checkbox"][disabled], +input[type="radio"][readonly], +input[type="checkbox"][readonly] { + background-color: transparent; +} + +.control-group.warning .control-label, +.control-group.warning .help-block, +.control-group.warning .help-inline { + color: #c09853; +} + +.control-group.warning .checkbox, +.control-group.warning .radio, +.control-group.warning input, +.control-group.warning select, +.control-group.warning textarea { + color: #c09853; +} + +.control-group.warning input, +.control-group.warning select, +.control-group.warning textarea { + border-color: #c09853; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.warning input:focus, +.control-group.warning select:focus, +.control-group.warning textarea:focus { + border-color: #a47e3c; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e; +} + +.control-group.warning .input-prepend .add-on, +.control-group.warning .input-append .add-on { + color: #c09853; + background-color: #fcf8e3; + border-color: #c09853; +} + +.control-group.error .control-label, +.control-group.error .help-block, +.control-group.error .help-inline { + color: #b94a48; +} + +.control-group.error .checkbox, +.control-group.error .radio, +.control-group.error input, +.control-group.error select, +.control-group.error textarea { + color: #b94a48; +} + +.control-group.error input, +.control-group.error select, +.control-group.error textarea { + border-color: #b94a48; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.error input:focus, +.control-group.error select:focus, +.control-group.error textarea:focus { + border-color: #953b39; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392; +} + +.control-group.error .input-prepend .add-on, +.control-group.error .input-append .add-on { + color: #b94a48; + background-color: #f2dede; + border-color: #b94a48; +} + +.control-group.success .control-label, +.control-group.success .help-block, +.control-group.success .help-inline { + color: #468847; +} + +.control-group.success .checkbox, +.control-group.success .radio, +.control-group.success input, +.control-group.success select, +.control-group.success textarea { + color: #468847; +} + +.control-group.success input, +.control-group.success select, +.control-group.success textarea { + border-color: #468847; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.success input:focus, +.control-group.success select:focus, +.control-group.success textarea:focus { + border-color: #356635; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b; +} + +.control-group.success .input-prepend .add-on, +.control-group.success .input-append .add-on { + color: #468847; + background-color: #dff0d8; + border-color: #468847; +} + +.control-group.info .control-label, +.control-group.info .help-block, +.control-group.info .help-inline { + color: #3a87ad; +} + +.control-group.info .checkbox, +.control-group.info .radio, +.control-group.info input, +.control-group.info select, +.control-group.info textarea { + color: #3a87ad; +} + +.control-group.info input, +.control-group.info select, +.control-group.info textarea { + border-color: #3a87ad; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); +} + +.control-group.info input:focus, +.control-group.info select:focus, +.control-group.info textarea:focus { + border-color: #2d6987; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3; + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3; + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3; +} + +.control-group.info .input-prepend .add-on, +.control-group.info .input-append .add-on { + color: #3a87ad; + background-color: #d9edf7; + border-color: #3a87ad; +} + +input:focus:invalid, +textarea:focus:invalid, +select:focus:invalid { + color: #b94a48; + border-color: #ee5f5b; +} + +input:focus:invalid:focus, +textarea:focus:invalid:focus, +select:focus:invalid:focus { + border-color: #e9322d; + -webkit-box-shadow: 0 0 6px #f8b9b7; + -moz-box-shadow: 0 0 6px #f8b9b7; + box-shadow: 0 0 6px #f8b9b7; +} + +.form-actions { + padding: 19px 20px 20px; + margin-top: 20px; + margin-bottom: 20px; + background-color: #f5f5f5; + border-top: 1px solid #e5e5e5; + *zoom: 1; +} + +.form-actions:before, +.form-actions:after { + display: table; + line-height: 0; + content: ""; +} + +.form-actions:after { + clear: both; +} + +.help-block, +.help-inline { + color: #595959; +} + +.help-block { + display: block; + margin-bottom: 10px; +} + +.help-inline { + display: inline-block; + *display: inline; + padding-left: 5px; + vertical-align: middle; + *zoom: 1; +} + +.input-append, +.input-prepend { + margin-bottom: 5px; + font-size: 0; + white-space: nowrap; +} + +.input-append input, +.input-prepend input, +.input-append select, +.input-prepend select, +.input-append .uneditable-input, +.input-prepend .uneditable-input, +.input-append .dropdown-menu, +.input-prepend .dropdown-menu { + font-size: 14px; +} + +.input-append input, +.input-prepend input, +.input-append select, +.input-prepend select, +.input-append .uneditable-input, +.input-prepend .uneditable-input { + position: relative; + margin-bottom: 0; + *margin-left: 0; + vertical-align: top; + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.input-append input:focus, +.input-prepend input:focus, +.input-append select:focus, +.input-prepend select:focus, +.input-append .uneditable-input:focus, +.input-prepend .uneditable-input:focus { + z-index: 2; +} + +.input-append .add-on, +.input-prepend .add-on { + display: inline-block; + width: auto; + height: 20px; + min-width: 16px; + padding: 4px 5px; + font-size: 14px; + font-weight: normal; + line-height: 20px; + text-align: center; + text-shadow: 0 1px 0 #ffffff; + background-color: #eeeeee; + border: 1px solid #ccc; +} + +.input-append .add-on, +.input-prepend .add-on, +.input-append .btn, +.input-prepend .btn, +.input-append .btn-group > .dropdown-toggle, +.input-prepend .btn-group > .dropdown-toggle { + vertical-align: top; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.input-append .active, +.input-prepend .active { + background-color: #a9dba9; + border-color: #46a546; +} + +.input-prepend .add-on, +.input-prepend .btn { + margin-right: -1px; +} + +.input-prepend .add-on:first-child, +.input-prepend .btn:first-child { + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; +} + +.input-append input, +.input-append select, +.input-append .uneditable-input { + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; +} + +.input-append input + .btn-group .btn:last-child, +.input-append select + .btn-group .btn:last-child, +.input-append .uneditable-input + .btn-group .btn:last-child { + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.input-append .add-on, +.input-append .btn, +.input-append .btn-group { + margin-left: -1px; +} + +.input-append .add-on:last-child, +.input-append .btn:last-child, +.input-append .btn-group:last-child > .dropdown-toggle { + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.input-prepend.input-append input, +.input-prepend.input-append select, +.input-prepend.input-append .uneditable-input { + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.input-prepend.input-append input + .btn-group .btn, +.input-prepend.input-append select + .btn-group .btn, +.input-prepend.input-append .uneditable-input + .btn-group .btn { + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.input-prepend.input-append .add-on:first-child, +.input-prepend.input-append .btn:first-child { + margin-right: -1px; + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; +} + +.input-prepend.input-append .add-on:last-child, +.input-prepend.input-append .btn:last-child { + margin-left: -1px; + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.input-prepend.input-append .btn-group:first-child { + margin-left: 0; +} + +input.search-query { + padding-right: 14px; + padding-right: 4px \9; + padding-left: 14px; + padding-left: 4px \9; + /* IE7-8 doesn't have border-radius, so don't indent the padding */ + + margin-bottom: 0; + -webkit-border-radius: 15px; + -moz-border-radius: 15px; + border-radius: 15px; +} + +/* Allow for input prepend/append in search forms */ + +.form-search .input-append .search-query, +.form-search .input-prepend .search-query { + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.form-search .input-append .search-query { + -webkit-border-radius: 14px 0 0 14px; + -moz-border-radius: 14px 0 0 14px; + border-radius: 14px 0 0 14px; +} + +.form-search .input-append .btn { + -webkit-border-radius: 0 14px 14px 0; + -moz-border-radius: 0 14px 14px 0; + border-radius: 0 14px 14px 0; +} + +.form-search .input-prepend .search-query { + -webkit-border-radius: 0 14px 14px 0; + -moz-border-radius: 0 14px 14px 0; + border-radius: 0 14px 14px 0; +} + +.form-search .input-prepend .btn { + -webkit-border-radius: 14px 0 0 14px; + -moz-border-radius: 14px 0 0 14px; + border-radius: 14px 0 0 14px; +} + +.form-search input, +.form-inline input, +.form-horizontal input, +.form-search textarea, +.form-inline textarea, +.form-horizontal textarea, +.form-search select, +.form-inline select, +.form-horizontal select, +.form-search .help-inline, +.form-inline .help-inline, +.form-horizontal .help-inline, +.form-search .uneditable-input, +.form-inline .uneditable-input, +.form-horizontal .uneditable-input, +.form-search .input-prepend, +.form-inline .input-prepend, +.form-horizontal .input-prepend, +.form-search .input-append, +.form-inline .input-append, +.form-horizontal .input-append { + display: inline-block; + *display: inline; + margin-bottom: 0; + vertical-align: middle; + *zoom: 1; +} + +.form-search .hide, +.form-inline .hide, +.form-horizontal .hide { + display: none; +} + +.form-search label, +.form-inline label, +.form-search .btn-group, +.form-inline .btn-group { + display: inline-block; +} + +.form-search .input-append, +.form-inline .input-append, +.form-search .input-prepend, +.form-inline .input-prepend { + margin-bottom: 0; +} + +.form-search .radio, +.form-search .checkbox, +.form-inline .radio, +.form-inline .checkbox { + padding-left: 0; + margin-bottom: 0; + vertical-align: middle; +} + +.form-search .radio input[type="radio"], +.form-search .checkbox input[type="checkbox"], +.form-inline .radio input[type="radio"], +.form-inline .checkbox input[type="checkbox"] { + float: left; + margin-right: 3px; + margin-left: 0; +} + +.control-group { + margin-bottom: 10px; +} + +legend + .control-group { + margin-top: 20px; + -webkit-margin-top-collapse: separate; +} + +.form-horizontal .control-group { + margin-bottom: 20px; + *zoom: 1; +} + +.form-horizontal .control-group:before, +.form-horizontal .control-group:after { + display: table; + line-height: 0; + content: ""; +} + +.form-horizontal .control-group:after { + clear: both; +} + +.form-horizontal .control-label { + float: left; + width: 160px; + padding-top: 5px; + text-align: right; +} + +.form-horizontal .controls { + *display: inline-block; + *padding-left: 20px; + margin-left: 180px; + *margin-left: 0; +} + +.form-horizontal .controls:first-child { + *padding-left: 180px; +} + +.form-horizontal .help-block { + margin-bottom: 0; +} + +.form-horizontal input + .help-block, +.form-horizontal select + .help-block, +.form-horizontal textarea + .help-block, +.form-horizontal .uneditable-input + .help-block, +.form-horizontal .input-prepend + .help-block, +.form-horizontal .input-append + .help-block { + margin-top: 10px; +} + +.form-horizontal .form-actions { + padding-left: 180px; +} + +table { + max-width: 100%; + background-color: transparent; + border-collapse: collapse; + border-spacing: 0; +} + +.table { + width: 100%; + margin-bottom: 20px; +} + +.table th, +.table td { + padding: 8px; + line-height: 20px; + text-align: left; + vertical-align: top; + border-top: 1px solid #dddddd; +} + +.table th { + font-weight: bold; +} + +.table thead th { + vertical-align: bottom; +} + +.table caption + thead tr:first-child th, +.table caption + thead tr:first-child td, +.table colgroup + thead tr:first-child th, +.table colgroup + thead tr:first-child td, +.table thead:first-child tr:first-child th, +.table thead:first-child tr:first-child td { + border-top: 0; +} + +.table tbody + tbody { + border-top: 2px solid #dddddd; +} + +.table .table { + background-color: #ffffff; +} + +.table-condensed th, +.table-condensed td { + padding: 4px 5px; +} + +.table-bordered { + border: 1px solid #dddddd; + border-collapse: separate; + *border-collapse: collapse; + border-left: 0; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.table-bordered th, +.table-bordered td { + border-left: 1px solid #dddddd; +} + +.table-bordered caption + thead tr:first-child th, +.table-bordered caption + tbody tr:first-child th, +.table-bordered caption + tbody tr:first-child td, +.table-bordered colgroup + thead tr:first-child th, +.table-bordered colgroup + tbody tr:first-child th, +.table-bordered colgroup + tbody tr:first-child td, +.table-bordered thead:first-child tr:first-child th, +.table-bordered tbody:first-child tr:first-child th, +.table-bordered tbody:first-child tr:first-child td { + border-top: 0; +} + +.table-bordered thead:first-child tr:first-child > th:first-child, +.table-bordered tbody:first-child tr:first-child > td:first-child { + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-topleft: 4px; +} + +.table-bordered thead:first-child tr:first-child > th:last-child, +.table-bordered tbody:first-child tr:first-child > td:last-child { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -moz-border-radius-topright: 4px; +} + +.table-bordered thead:last-child tr:last-child > th:first-child, +.table-bordered tbody:last-child tr:last-child > td:first-child, +.table-bordered tfoot:last-child tr:last-child > td:first-child { + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -moz-border-radius-bottomleft: 4px; +} + +.table-bordered thead:last-child tr:last-child > th:last-child, +.table-bordered tbody:last-child tr:last-child > td:last-child, +.table-bordered tfoot:last-child tr:last-child > td:last-child { + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -moz-border-radius-bottomright: 4px; +} + +.table-bordered tfoot + tbody:last-child tr:last-child td:first-child { + -webkit-border-bottom-left-radius: 0; + border-bottom-left-radius: 0; + -moz-border-radius-bottomleft: 0; +} + +.table-bordered tfoot + tbody:last-child tr:last-child td:last-child { + -webkit-border-bottom-right-radius: 0; + border-bottom-right-radius: 0; + -moz-border-radius-bottomright: 0; +} + +.table-bordered caption + thead tr:first-child th:first-child, +.table-bordered caption + tbody tr:first-child td:first-child, +.table-bordered colgroup + thead tr:first-child th:first-child, +.table-bordered colgroup + tbody tr:first-child td:first-child { + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-topleft: 4px; +} + +.table-bordered caption + thead tr:first-child th:last-child, +.table-bordered caption + tbody tr:first-child td:last-child, +.table-bordered colgroup + thead tr:first-child th:last-child, +.table-bordered colgroup + tbody tr:first-child td:last-child { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -moz-border-radius-topright: 4px; +} + +.table-striped tbody > tr:nth-child(odd) > td, +.table-striped tbody > tr:nth-child(odd) > th { + background-color: #f9f9f9; +} + +.table-hover tbody tr:hover td, +.table-hover tbody tr:hover th { + background-color: #f5f5f5; +} + +table td[class*="span"], +table th[class*="span"], +.row-fluid table td[class*="span"], +.row-fluid table th[class*="span"] { + display: table-cell; + float: none; + margin-left: 0; +} + +.table td.span1, +.table th.span1 { + float: none; + width: 44px; + margin-left: 0; +} + +.table td.span2, +.table th.span2 { + float: none; + width: 124px; + margin-left: 0; +} + +.table td.span3, +.table th.span3 { + float: none; + width: 204px; + margin-left: 0; +} + +.table td.span4, +.table th.span4 { + float: none; + width: 284px; + margin-left: 0; +} + +.table td.span5, +.table th.span5 { + float: none; + width: 364px; + margin-left: 0; +} + +.table td.span6, +.table th.span6 { + float: none; + width: 444px; + margin-left: 0; +} + +.table td.span7, +.table th.span7 { + float: none; + width: 524px; + margin-left: 0; +} + +.table td.span8, +.table th.span8 { + float: none; + width: 604px; + margin-left: 0; +} + +.table td.span9, +.table th.span9 { + float: none; + width: 684px; + margin-left: 0; +} + +.table td.span10, +.table th.span10 { + float: none; + width: 764px; + margin-left: 0; +} + +.table td.span11, +.table th.span11 { + float: none; + width: 844px; + margin-left: 0; +} + +.table td.span12, +.table th.span12 { + float: none; + width: 924px; + margin-left: 0; +} + +.table tbody tr.success td { + background-color: #dff0d8; +} + +.table tbody tr.error td { + background-color: #f2dede; +} + +.table tbody tr.warning td { + background-color: #fcf8e3; +} + +.table tbody tr.info td { + background-color: #d9edf7; +} + +.table-hover tbody tr.success:hover td { + background-color: #d0e9c6; +} + +.table-hover tbody tr.error:hover td { + background-color: #ebcccc; +} + +.table-hover tbody tr.warning:hover td { + background-color: #faf2cc; +} + +.table-hover tbody tr.info:hover td { + background-color: #c4e3f3; +} + +[class^="icon-"], +[class*=" icon-"] { + display: inline-block; + width: 14px; + height: 14px; + margin-top: 1px; + *margin-right: .3em; + line-height: 14px; + vertical-align: text-top; + background-image: url("./img/glyphicons-halflings.png"); + background-position: 14px 14px; + background-repeat: no-repeat; +} + +/* White icons with optional class, or on hover/active states of certain elements */ + +.icon-white, +.nav-pills > .active > a > [class^="icon-"], +.nav-pills > .active > a > [class*=" icon-"], +.nav-list > .active > a > [class^="icon-"], +.nav-list > .active > a > [class*=" icon-"], +.navbar-inverse .nav > .active > a > [class^="icon-"], +.navbar-inverse .nav > .active > a > [class*=" icon-"], +.dropdown-menu > li > a:hover > [class^="icon-"], +.dropdown-menu > li > a:hover > [class*=" icon-"], +.dropdown-menu > .active > a > [class^="icon-"], +.dropdown-menu > .active > a > [class*=" icon-"], +.dropdown-submenu:hover > a > [class^="icon-"], +.dropdown-submenu:hover > a > [class*=" icon-"] { + background-image: url("./img/glyphicons-halflings-white.png"); +} + +.icon-glass { + background-position: 0 0; +} + +.icon-music { + background-position: -24px 0; +} + +.icon-search { + background-position: -48px 0; +} + +.icon-envelope { + background-position: -72px 0; +} + +.icon-heart { + background-position: -96px 0; +} + +.icon-star { + background-position: -120px 0; +} + +.icon-star-empty { + background-position: -144px 0; +} + +.icon-user { + background-position: -168px 0; +} + +.icon-film { + background-position: -192px 0; +} + +.icon-th-large { + background-position: -216px 0; +} + +.icon-th { + background-position: -240px 0; +} + +.icon-th-list { + background-position: -264px 0; +} + +.icon-ok { + background-position: -288px 0; +} + +.icon-remove { + background-position: -312px 0; +} + +.icon-zoom-in { + background-position: -336px 0; +} + +.icon-zoom-out { + background-position: -360px 0; +} + +.icon-off { + background-position: -384px 0; +} + +.icon-signal { + background-position: -408px 0; +} + +.icon-cog { + background-position: -432px 0; +} + +.icon-trash { + background-position: -456px 0; +} + +.icon-home { + background-position: 0 -24px; +} + +.icon-file { + background-position: -24px -24px; +} + +.icon-time { + background-position: -48px -24px; +} + +.icon-road { + background-position: -72px -24px; +} + +.icon-download-alt { + background-position: -96px -24px; +} + +.icon-download { + background-position: -120px -24px; +} + +.icon-upload { + background-position: -144px -24px; +} + +.icon-inbox { + background-position: -168px -24px; +} + +.icon-play-circle { + background-position: -192px -24px; +} + +.icon-repeat { + background-position: -216px -24px; +} + +.icon-refresh { + background-position: -240px -24px; +} + +.icon-list-alt { + background-position: -264px -24px; +} + +.icon-lock { + background-position: -287px -24px; +} + +.icon-flag { + background-position: -312px -24px; +} + +.icon-headphones { + background-position: -336px -24px; +} + +.icon-volume-off { + background-position: -360px -24px; +} + +.icon-volume-down { + background-position: -384px -24px; +} + +.icon-volume-up { + background-position: -408px -24px; +} + +.icon-qrcode { + background-position: -432px -24px; +} + +.icon-barcode { + background-position: -456px -24px; +} + +.icon-tag { + background-position: 0 -48px; +} + +.icon-tags { + background-position: -25px -48px; +} + +.icon-book { + background-position: -48px -48px; +} + +.icon-bookmark { + background-position: -72px -48px; +} + +.icon-print { + background-position: -96px -48px; +} + +.icon-camera { + background-position: -120px -48px; +} + +.icon-font { + background-position: -144px -48px; +} + +.icon-bold { + background-position: -167px -48px; +} + +.icon-italic { + background-position: -192px -48px; +} + +.icon-text-height { + background-position: -216px -48px; +} + +.icon-text-width { + background-position: -240px -48px; +} + +.icon-align-left { + background-position: -264px -48px; +} + +.icon-align-center { + background-position: -288px -48px; +} + +.icon-align-right { + background-position: -312px -48px; +} + +.icon-align-justify { + background-position: -336px -48px; +} + +.icon-list { + background-position: -360px -48px; +} + +.icon-indent-left { + background-position: -384px -48px; +} + +.icon-indent-right { + background-position: -408px -48px; +} + +.icon-facetime-video { + background-position: -432px -48px; +} + +.icon-picture { + background-position: -456px -48px; +} + +.icon-pencil { + background-position: 0 -72px; +} + +.icon-map-marker { + background-position: -24px -72px; +} + +.icon-adjust { + background-position: -48px -72px; +} + +.icon-tint { + background-position: -72px -72px; +} + +.icon-edit { + background-position: -96px -72px; +} + +.icon-share { + background-position: -120px -72px; +} + +.icon-check { + background-position: -144px -72px; +} + +.icon-move { + background-position: -168px -72px; +} + +.icon-step-backward { + background-position: -192px -72px; +} + +.icon-fast-backward { + background-position: -216px -72px; +} + +.icon-backward { + background-position: -240px -72px; +} + +.icon-play { + background-position: -264px -72px; +} + +.icon-pause { + background-position: -288px -72px; +} + +.icon-stop { + background-position: -312px -72px; +} + +.icon-forward { + background-position: -336px -72px; +} + +.icon-fast-forward { + background-position: -360px -72px; +} + +.icon-step-forward { + background-position: -384px -72px; +} + +.icon-eject { + background-position: -408px -72px; +} + +.icon-chevron-left { + background-position: -432px -72px; +} + +.icon-chevron-right { + background-position: -456px -72px; +} + +.icon-plus-sign { + background-position: 0 -96px; +} + +.icon-minus-sign { + background-position: -24px -96px; +} + +.icon-remove-sign { + background-position: -48px -96px; +} + +.icon-ok-sign { + background-position: -72px -96px; +} + +.icon-question-sign { + background-position: -96px -96px; +} + +.icon-info-sign { + background-position: -120px -96px; +} + +.icon-screenshot { + background-position: -144px -96px; +} + +.icon-remove-circle { + background-position: -168px -96px; +} + +.icon-ok-circle { + background-position: -192px -96px; +} + +.icon-ban-circle { + background-position: -216px -96px; +} + +.icon-arrow-left { + background-position: -240px -96px; +} + +.icon-arrow-right { + background-position: -264px -96px; +} + +.icon-arrow-up { + background-position: -289px -96px; +} + +.icon-arrow-down { + background-position: -312px -96px; +} + +.icon-share-alt { + background-position: -336px -96px; +} + +.icon-resize-full { + background-position: -360px -96px; +} + +.icon-resize-small { + background-position: -384px -96px; +} + +.icon-plus { + background-position: -408px -96px; +} + +.icon-minus { + background-position: -433px -96px; +} + +.icon-asterisk { + background-position: -456px -96px; +} + +.icon-exclamation-sign { + background-position: 0 -120px; +} + +.icon-gift { + background-position: -24px -120px; +} + +.icon-leaf { + background-position: -48px -120px; +} + +.icon-fire { + background-position: -72px -120px; +} + +.icon-eye-open { + background-position: -96px -120px; +} + +.icon-eye-close { + background-position: -120px -120px; +} + +.icon-warning-sign { + background-position: -144px -120px; +} + +.icon-plane { + background-position: -168px -120px; +} + +.icon-calendar { + background-position: -192px -120px; +} + +.icon-random { + width: 16px; + background-position: -216px -120px; +} + +.icon-comment { + background-position: -240px -120px; +} + +.icon-magnet { + background-position: -264px -120px; +} + +.icon-chevron-up { + background-position: -288px -120px; +} + +.icon-chevron-down { + background-position: -313px -119px; +} + +.icon-retweet { + background-position: -336px -120px; +} + +.icon-shopping-cart { + background-position: -360px -120px; +} + +.icon-folder-close { + background-position: -384px -120px; +} + +.icon-folder-open { + width: 16px; + background-position: -408px -120px; +} + +.icon-resize-vertical { + background-position: -432px -119px; +} + +.icon-resize-horizontal { + background-position: -456px -118px; +} + +.icon-hdd { + background-position: 0 -144px; +} + +.icon-bullhorn { + background-position: -24px -144px; +} + +.icon-bell { + background-position: -48px -144px; +} + +.icon-certificate { + background-position: -72px -144px; +} + +.icon-thumbs-up { + background-position: -96px -144px; +} + +.icon-thumbs-down { + background-position: -120px -144px; +} + +.icon-hand-right { + background-position: -144px -144px; +} + +.icon-hand-left { + background-position: -168px -144px; +} + +.icon-hand-up { + background-position: -192px -144px; +} + +.icon-hand-down { + background-position: -216px -144px; +} + +.icon-circle-arrow-right { + background-position: -240px -144px; +} + +.icon-circle-arrow-left { + background-position: -264px -144px; +} + +.icon-circle-arrow-up { + background-position: -288px -144px; +} + +.icon-circle-arrow-down { + background-position: -312px -144px; +} + +.icon-globe { + background-position: -336px -144px; +} + +.icon-wrench { + background-position: -360px -144px; +} + +.icon-tasks { + background-position: -384px -144px; +} + +.icon-filter { + background-position: -408px -144px; +} + +.icon-briefcase { + background-position: -432px -144px; +} + +.icon-fullscreen { + background-position: -456px -144px; +} + +.dropup, +.dropdown { + position: relative; +} + +.dropdown-toggle { + *margin-bottom: -3px; +} + +.dropdown-toggle:active, +.open .dropdown-toggle { + outline: 0; +} + +.caret { + display: inline-block; + width: 0; + height: 0; + vertical-align: top; + border-top: 4px solid #000000; + border-right: 4px solid transparent; + border-left: 4px solid transparent; + content: ""; +} + +.dropdown .caret { + margin-top: 8px; + margin-left: 2px; +} + +.dropdown-menu { + position: absolute; + top: 100%; + left: 0; + z-index: 1000; + display: none; + float: left; + min-width: 160px; + padding: 5px 0; + margin: 2px 0 0; + list-style: none; + background-color: #ffffff; + border: 1px solid #ccc; + border: 1px solid rgba(0, 0, 0, 0.2); + *border-right-width: 2px; + *border-bottom-width: 2px; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -moz-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -webkit-background-clip: padding-box; + -moz-background-clip: padding; + background-clip: padding-box; +} + +.dropdown-menu.pull-right { + right: 0; + left: auto; +} + +.dropdown-menu .divider { + *width: 100%; + height: 1px; + margin: 9px 1px; + *margin: -5px 0 5px; + overflow: hidden; + background-color: #e5e5e5; + border-bottom: 1px solid #ffffff; +} + +.dropdown-menu li > a { + display: block; + padding: 3px 20px; + clear: both; + font-weight: normal; + line-height: 20px; + color: #333333; + white-space: nowrap; +} + +.dropdown-menu li > a:hover, +.dropdown-menu li > a:focus, +.dropdown-submenu:hover > a { + color: #ffffff; + text-decoration: none; + background-color: #0081c2; + background-image: -moz-linear-gradient(top, #0088cc, #0077b3); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); + background-image: -webkit-linear-gradient(top, #0088cc, #0077b3); + background-image: -o-linear-gradient(top, #0088cc, #0077b3); + background-image: linear-gradient(to bottom, #0088cc, #0077b3); + background-repeat: repeat-x; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); +} + +.dropdown-menu .active > a, +.dropdown-menu .active > a:hover { + color: #ffffff; + text-decoration: none; + background-color: #0081c2; + background-image: -moz-linear-gradient(top, #0088cc, #0077b3); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0077b3)); + background-image: -webkit-linear-gradient(top, #0088cc, #0077b3); + background-image: -o-linear-gradient(top, #0088cc, #0077b3); + background-image: linear-gradient(to bottom, #0088cc, #0077b3); + background-repeat: repeat-x; + outline: 0; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0077b3', GradientType=0); +} + +.dropdown-menu .disabled > a, +.dropdown-menu .disabled > a:hover { + color: #999999; +} + +.dropdown-menu .disabled > a:hover { + text-decoration: none; + cursor: default; + background-color: transparent; + background-image: none; + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.open { + *z-index: 1000; +} + +.open > .dropdown-menu { + display: block; +} + +.pull-right > .dropdown-menu { + right: 0; + left: auto; +} + +.dropup .caret, +.navbar-fixed-bottom .dropdown .caret { + border-top: 0; + border-bottom: 4px solid #000000; + content: ""; +} + +.dropup .dropdown-menu, +.navbar-fixed-bottom .dropdown .dropdown-menu { + top: auto; + bottom: 100%; + margin-bottom: 1px; +} + +.dropdown-submenu { + position: relative; +} + +.dropdown-submenu > .dropdown-menu { + top: 0; + left: 100%; + margin-top: -6px; + margin-left: -1px; + -webkit-border-radius: 0 6px 6px 6px; + -moz-border-radius: 0 6px 6px 6px; + border-radius: 0 6px 6px 6px; +} + +.dropdown-submenu:hover > .dropdown-menu { + display: block; +} + +.dropup .dropdown-submenu > .dropdown-menu { + top: auto; + bottom: 0; + margin-top: 0; + margin-bottom: -2px; + -webkit-border-radius: 5px 5px 5px 0; + -moz-border-radius: 5px 5px 5px 0; + border-radius: 5px 5px 5px 0; +} + +.dropdown-submenu > a:after { + display: block; + float: right; + width: 0; + height: 0; + margin-top: 5px; + margin-right: -10px; + border-color: transparent; + border-left-color: #cccccc; + border-style: solid; + border-width: 5px 0 5px 5px; + content: " "; +} + +.dropdown-submenu:hover > a:after { + border-left-color: #ffffff; +} + +.dropdown-submenu.pull-left { + float: none; +} + +.dropdown-submenu.pull-left > .dropdown-menu { + left: -100%; + margin-left: 10px; + -webkit-border-radius: 6px 0 6px 6px; + -moz-border-radius: 6px 0 6px 6px; + border-radius: 6px 0 6px 6px; +} + +.dropdown .dropdown-menu .nav-header { + padding-right: 20px; + padding-left: 20px; +} + +.typeahead { + z-index: 1051; + margin-top: 2px; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.well { + min-height: 20px; + padding: 19px; + margin-bottom: 20px; + background-color: #f5f5f5; + border: 1px solid #e3e3e3; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05); +} + +.well blockquote { + border-color: #ddd; + border-color: rgba(0, 0, 0, 0.15); +} + +.well-large { + padding: 24px; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + +.well-small { + padding: 9px; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +.fade { + opacity: 0; + -webkit-transition: opacity 0.15s linear; + -moz-transition: opacity 0.15s linear; + -o-transition: opacity 0.15s linear; + transition: opacity 0.15s linear; +} + +.fade.in { + opacity: 1; +} + +.collapse { + position: relative; + height: 0; + overflow: hidden; + -webkit-transition: height 0.35s ease; + -moz-transition: height 0.35s ease; + -o-transition: height 0.35s ease; + transition: height 0.35s ease; +} + +.collapse.in { + height: auto; +} + +.close { + float: right; + font-size: 20px; + font-weight: bold; + line-height: 20px; + color: #000000; + text-shadow: 0 1px 0 #ffffff; + opacity: 0.2; + filter: alpha(opacity=20); +} + +.close:hover { + color: #000000; + text-decoration: none; + cursor: pointer; + opacity: 0.4; + filter: alpha(opacity=40); +} + +button.close { + padding: 0; + cursor: pointer; + background: transparent; + border: 0; + -webkit-appearance: none; +} + +.btn { + display: inline-block; + *display: inline; + padding: 4px 12px; + margin-bottom: 0; + *margin-left: .3em; + font-size: 14px; + line-height: 20px; + color: #333333; + text-align: center; + text-shadow: 0 1px 1px rgba(255, 255, 255, 0.75); + vertical-align: middle; + cursor: pointer; + background-color: #f5f5f5; + *background-color: #e6e6e6; + background-image: -moz-linear-gradient(top, #ffffff, #e6e6e6); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ffffff), to(#e6e6e6)); + background-image: -webkit-linear-gradient(top, #ffffff, #e6e6e6); + background-image: -o-linear-gradient(top, #ffffff, #e6e6e6); + background-image: linear-gradient(to bottom, #ffffff, #e6e6e6); + background-repeat: repeat-x; + border: 1px solid #bbbbbb; + *border: 0; + border-color: #e6e6e6 #e6e6e6 #bfbfbf; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + border-bottom-color: #a2a2a2; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe6e6e6', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); + *zoom: 1; + -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn:hover, +.btn:active, +.btn.active, +.btn.disabled, +.btn[disabled] { + color: #333333; + background-color: #e6e6e6; + *background-color: #d9d9d9; +} + +.btn:active, +.btn.active { + background-color: #cccccc \9; +} + +.btn:first-child { + *margin-left: 0; +} + +.btn:hover { + color: #333333; + text-decoration: none; + background-position: 0 -15px; + -webkit-transition: background-position 0.1s linear; + -moz-transition: background-position 0.1s linear; + -o-transition: background-position 0.1s linear; + transition: background-position 0.1s linear; +} + +.btn:focus { + outline: thin dotted #333; + outline: 5px auto -webkit-focus-ring-color; + outline-offset: -2px; +} + +.btn.active, +.btn:active { + background-image: none; + outline: 0; + -webkit-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn.disabled, +.btn[disabled] { + cursor: default; + background-image: none; + opacity: 0.65; + filter: alpha(opacity=65); + -webkit-box-shadow: none; + -moz-box-shadow: none; + box-shadow: none; +} + +.btn-large { + padding: 11px 19px; + font-size: 17.5px; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + +.btn-large [class^="icon-"], +.btn-large [class*=" icon-"] { + margin-top: 4px; +} + +.btn-small { + padding: 2px 10px; + font-size: 11.9px; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +.btn-small [class^="icon-"], +.btn-small [class*=" icon-"] { + margin-top: 0; +} + +.btn-mini [class^="icon-"], +.btn-mini [class*=" icon-"] { + margin-top: -1px; +} + +.btn-mini { + padding: 0 6px; + font-size: 10.5px; + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +.btn-block { + display: block; + width: 100%; + padding-right: 0; + padding-left: 0; + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; +} + +.btn-block + .btn-block { + margin-top: 5px; +} + +input[type="submit"].btn-block, +input[type="reset"].btn-block, +input[type="button"].btn-block { + width: 100%; +} + +.btn-primary.active, +.btn-warning.active, +.btn-danger.active, +.btn-success.active, +.btn-info.active, +.btn-inverse.active { + color: rgba(255, 255, 255, 0.75); +} + +.btn { + border-color: #c5c5c5; + border-color: rgba(0, 0, 0, 0.15) rgba(0, 0, 0, 0.15) rgba(0, 0, 0, 0.25); +} + +.btn-primary { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #006dcc; + *background-color: #0044cc; + background-image: -moz-linear-gradient(top, #0088cc, #0044cc); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#0088cc), to(#0044cc)); + background-image: -webkit-linear-gradient(top, #0088cc, #0044cc); + background-image: -o-linear-gradient(top, #0088cc, #0044cc); + background-image: linear-gradient(to bottom, #0088cc, #0044cc); + background-repeat: repeat-x; + border-color: #0044cc #0044cc #002a80; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff0088cc', endColorstr='#ff0044cc', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.btn-primary:hover, +.btn-primary:active, +.btn-primary.active, +.btn-primary.disabled, +.btn-primary[disabled] { + color: #ffffff; + background-color: #0044cc; + *background-color: #003bb3; +} + +.btn-primary:active, +.btn-primary.active { + background-color: #003399 \9; +} + +.btn-warning { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #faa732; + *background-color: #f89406; + background-image: -moz-linear-gradient(top, #fbb450, #f89406); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#fbb450), to(#f89406)); + background-image: -webkit-linear-gradient(top, #fbb450, #f89406); + background-image: -o-linear-gradient(top, #fbb450, #f89406); + background-image: linear-gradient(to bottom, #fbb450, #f89406); + background-repeat: repeat-x; + border-color: #f89406 #f89406 #ad6704; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.btn-warning:hover, +.btn-warning:active, +.btn-warning.active, +.btn-warning.disabled, +.btn-warning[disabled] { + color: #ffffff; + background-color: #f89406; + *background-color: #df8505; +} + +.btn-warning:active, +.btn-warning.active { + background-color: #c67605 \9; +} + +.btn-danger { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #da4f49; + *background-color: #bd362f; + background-image: -moz-linear-gradient(top, #ee5f5b, #bd362f); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ee5f5b), to(#bd362f)); + background-image: -webkit-linear-gradient(top, #ee5f5b, #bd362f); + background-image: -o-linear-gradient(top, #ee5f5b, #bd362f); + background-image: linear-gradient(to bottom, #ee5f5b, #bd362f); + background-repeat: repeat-x; + border-color: #bd362f #bd362f #802420; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffbd362f', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.btn-danger:hover, +.btn-danger:active, +.btn-danger.active, +.btn-danger.disabled, +.btn-danger[disabled] { + color: #ffffff; + background-color: #bd362f; + *background-color: #a9302a; +} + +.btn-danger:active, +.btn-danger.active { + background-color: #942a25 \9; +} + +.btn-success { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #5bb75b; + *background-color: #51a351; + background-image: -moz-linear-gradient(top, #62c462, #51a351); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#62c462), to(#51a351)); + background-image: -webkit-linear-gradient(top, #62c462, #51a351); + background-image: -o-linear-gradient(top, #62c462, #51a351); + background-image: linear-gradient(to bottom, #62c462, #51a351); + background-repeat: repeat-x; + border-color: #51a351 #51a351 #387038; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff51a351', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.btn-success:hover, +.btn-success:active, +.btn-success.active, +.btn-success.disabled, +.btn-success[disabled] { + color: #ffffff; + background-color: #51a351; + *background-color: #499249; +} + +.btn-success:active, +.btn-success.active { + background-color: #408140 \9; +} + +.btn-info { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #49afcd; + *background-color: #2f96b4; + background-image: -moz-linear-gradient(top, #5bc0de, #2f96b4); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#5bc0de), to(#2f96b4)); + background-image: -webkit-linear-gradient(top, #5bc0de, #2f96b4); + background-image: -o-linear-gradient(top, #5bc0de, #2f96b4); + background-image: linear-gradient(to bottom, #5bc0de, #2f96b4); + background-repeat: repeat-x; + border-color: #2f96b4 #2f96b4 #1f6377; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2f96b4', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.btn-info:hover, +.btn-info:active, +.btn-info.active, +.btn-info.disabled, +.btn-info[disabled] { + color: #ffffff; + background-color: #2f96b4; + *background-color: #2a85a0; +} + +.btn-info:active, +.btn-info.active { + background-color: #24748c \9; +} + +.btn-inverse { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #363636; + *background-color: #222222; + background-image: -moz-linear-gradient(top, #444444, #222222); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#444444), to(#222222)); + background-image: -webkit-linear-gradient(top, #444444, #222222); + background-image: -o-linear-gradient(top, #444444, #222222); + background-image: linear-gradient(to bottom, #444444, #222222); + background-repeat: repeat-x; + border-color: #222222 #222222 #000000; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff444444', endColorstr='#ff222222', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.btn-inverse:hover, +.btn-inverse:active, +.btn-inverse.active, +.btn-inverse.disabled, +.btn-inverse[disabled] { + color: #ffffff; + background-color: #222222; + *background-color: #151515; +} + +.btn-inverse:active, +.btn-inverse.active { + background-color: #080808 \9; +} + +button.btn, +input[type="submit"].btn { + *padding-top: 3px; + *padding-bottom: 3px; +} + +button.btn::-moz-focus-inner, +input[type="submit"].btn::-moz-focus-inner { + padding: 0; + border: 0; +} + +button.btn.btn-large, +input[type="submit"].btn.btn-large { + *padding-top: 7px; + *padding-bottom: 7px; +} + +button.btn.btn-small, +input[type="submit"].btn.btn-small { + *padding-top: 3px; + *padding-bottom: 3px; +} + +button.btn.btn-mini, +input[type="submit"].btn.btn-mini { + *padding-top: 1px; + *padding-bottom: 1px; +} + +.btn-link, +.btn-link:active, +.btn-link[disabled] { + background-color: transparent; + background-image: none; + -webkit-box-shadow: none; + -moz-box-shadow: none; + box-shadow: none; +} + +.btn-link { + color: #0088cc; + cursor: pointer; + border-color: transparent; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.btn-link:hover { + color: #005580; + text-decoration: underline; + background-color: transparent; +} + +.btn-link[disabled]:hover { + color: #333333; + text-decoration: none; +} + +.btn-group { + position: relative; + display: inline-block; + *display: inline; + *margin-left: .3em; + font-size: 0; + white-space: nowrap; + vertical-align: middle; + *zoom: 1; +} + +.btn-group:first-child { + *margin-left: 0; +} + +.btn-group + .btn-group { + margin-left: 5px; +} + +.btn-toolbar { + margin-top: 10px; + margin-bottom: 10px; + font-size: 0; +} + +.btn-toolbar > .btn + .btn, +.btn-toolbar > .btn-group + .btn, +.btn-toolbar > .btn + .btn-group { + margin-left: 5px; +} + +.btn-group > .btn { + position: relative; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.btn-group > .btn + .btn { + margin-left: -1px; +} + +.btn-group > .btn, +.btn-group > .dropdown-menu, +.btn-group > .popover { + font-size: 14px; +} + +.btn-group > .btn-mini { + font-size: 10.5px; +} + +.btn-group > .btn-small { + font-size: 11.9px; +} + +.btn-group > .btn-large { + font-size: 17.5px; +} + +.btn-group > .btn:first-child { + margin-left: 0; + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-bottomleft: 4px; + -moz-border-radius-topleft: 4px; +} + +.btn-group > .btn:last-child, +.btn-group > .dropdown-toggle { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -moz-border-radius-topright: 4px; + -moz-border-radius-bottomright: 4px; +} + +.btn-group > .btn.large:first-child { + margin-left: 0; + -webkit-border-bottom-left-radius: 6px; + border-bottom-left-radius: 6px; + -webkit-border-top-left-radius: 6px; + border-top-left-radius: 6px; + -moz-border-radius-bottomleft: 6px; + -moz-border-radius-topleft: 6px; +} + +.btn-group > .btn.large:last-child, +.btn-group > .large.dropdown-toggle { + -webkit-border-top-right-radius: 6px; + border-top-right-radius: 6px; + -webkit-border-bottom-right-radius: 6px; + border-bottom-right-radius: 6px; + -moz-border-radius-topright: 6px; + -moz-border-radius-bottomright: 6px; +} + +.btn-group > .btn:hover, +.btn-group > .btn:focus, +.btn-group > .btn:active, +.btn-group > .btn.active { + z-index: 2; +} + +.btn-group .dropdown-toggle:active, +.btn-group.open .dropdown-toggle { + outline: 0; +} + +.btn-group > .btn + .dropdown-toggle { + *padding-top: 5px; + padding-right: 8px; + *padding-bottom: 5px; + padding-left: 8px; + -webkit-box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 1px 0 0 rgba(255, 255, 255, 0.125), inset 0 1px 0 rgba(255, 255, 255, 0.2), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn-group > .btn-mini + .dropdown-toggle { + *padding-top: 2px; + padding-right: 5px; + *padding-bottom: 2px; + padding-left: 5px; +} + +.btn-group > .btn-small + .dropdown-toggle { + *padding-top: 5px; + *padding-bottom: 4px; +} + +.btn-group > .btn-large + .dropdown-toggle { + *padding-top: 7px; + padding-right: 12px; + *padding-bottom: 7px; + padding-left: 12px; +} + +.btn-group.open .dropdown-toggle { + background-image: none; + -webkit-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: inset 0 2px 4px rgba(0, 0, 0, 0.15), 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.btn-group.open .btn.dropdown-toggle { + background-color: #e6e6e6; +} + +.btn-group.open .btn-primary.dropdown-toggle { + background-color: #0044cc; +} + +.btn-group.open .btn-warning.dropdown-toggle { + background-color: #f89406; +} + +.btn-group.open .btn-danger.dropdown-toggle { + background-color: #bd362f; +} + +.btn-group.open .btn-success.dropdown-toggle { + background-color: #51a351; +} + +.btn-group.open .btn-info.dropdown-toggle { + background-color: #2f96b4; +} + +.btn-group.open .btn-inverse.dropdown-toggle { + background-color: #222222; +} + +.btn .caret { + margin-top: 8px; + margin-left: 0; +} + +.btn-mini .caret, +.btn-small .caret, +.btn-large .caret { + margin-top: 6px; +} + +.btn-large .caret { + border-top-width: 5px; + border-right-width: 5px; + border-left-width: 5px; +} + +.dropup .btn-large .caret { + border-bottom-width: 5px; +} + +.btn-primary .caret, +.btn-warning .caret, +.btn-danger .caret, +.btn-info .caret, +.btn-success .caret, +.btn-inverse .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; +} + +.btn-group-vertical { + display: inline-block; + *display: inline; + /* IE7 inline-block hack */ + + *zoom: 1; +} + +.btn-group-vertical > .btn { + display: block; + float: none; + max-width: 100%; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.btn-group-vertical > .btn + .btn { + margin-top: -1px; + margin-left: 0; +} + +.btn-group-vertical > .btn:first-child { + -webkit-border-radius: 4px 4px 0 0; + -moz-border-radius: 4px 4px 0 0; + border-radius: 4px 4px 0 0; +} + +.btn-group-vertical > .btn:last-child { + -webkit-border-radius: 0 0 4px 4px; + -moz-border-radius: 0 0 4px 4px; + border-radius: 0 0 4px 4px; +} + +.btn-group-vertical > .btn-large:first-child { + -webkit-border-radius: 6px 6px 0 0; + -moz-border-radius: 6px 6px 0 0; + border-radius: 6px 6px 0 0; +} + +.btn-group-vertical > .btn-large:last-child { + -webkit-border-radius: 0 0 6px 6px; + -moz-border-radius: 0 0 6px 6px; + border-radius: 0 0 6px 6px; +} + +.alert { + padding: 8px 35px 8px 14px; + margin-bottom: 20px; + text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5); + background-color: #fcf8e3; + border: 1px solid #fbeed5; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.alert, +.alert h4 { + color: #c09853; +} + +.alert h4 { + margin: 0; +} + +.alert .close { + position: relative; + top: -2px; + right: -21px; + line-height: 20px; +} + +.alert-success { + color: #468847; + background-color: #dff0d8; + border-color: #d6e9c6; +} + +.alert-success h4 { + color: #468847; +} + +.alert-danger, +.alert-error { + color: #b94a48; + background-color: #f2dede; + border-color: #eed3d7; +} + +.alert-danger h4, +.alert-error h4 { + color: #b94a48; +} + +.alert-info { + color: #3a87ad; + background-color: #d9edf7; + border-color: #bce8f1; +} + +.alert-info h4 { + color: #3a87ad; +} + +.alert-block { + padding-top: 14px; + padding-bottom: 14px; +} + +.alert-block > p, +.alert-block > ul { + margin-bottom: 0; +} + +.alert-block p + p { + margin-top: 5px; +} + +.nav { + margin-bottom: 20px; + margin-left: 0; + list-style: none; +} + +.nav > li > a { + display: block; +} + +.nav > li > a:hover { + text-decoration: none; + background-color: #eeeeee; +} + +.nav > li > a > img { + max-width: none; +} + +.nav > .pull-right { + float: right; +} + +.nav-header { + display: block; + padding: 3px 15px; + font-size: 11px; + font-weight: bold; + line-height: 20px; + color: #999999; + text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5); + text-transform: uppercase; +} + +.nav li + .nav-header { + margin-top: 9px; +} + +.nav-list { + padding-right: 15px; + padding-left: 15px; + margin-bottom: 0; +} + +.nav-list > li > a, +.nav-list .nav-header { + margin-right: -15px; + margin-left: -15px; + text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5); +} + +.nav-list > li > a { + padding: 3px 15px; +} + +.nav-list > .active > a, +.nav-list > .active > a:hover { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.2); + background-color: #0088cc; +} + +.nav-list [class^="icon-"], +.nav-list [class*=" icon-"] { + margin-right: 2px; +} + +.nav-list .divider { + *width: 100%; + height: 1px; + margin: 9px 1px; + *margin: -5px 0 5px; + overflow: hidden; + background-color: #e5e5e5; + border-bottom: 1px solid #ffffff; +} + +.nav-tabs, +.nav-pills { + *zoom: 1; +} + +.nav-tabs:before, +.nav-pills:before, +.nav-tabs:after, +.nav-pills:after { + display: table; + line-height: 0; + content: ""; +} + +.nav-tabs:after, +.nav-pills:after { + clear: both; +} + +.nav-tabs > li, +.nav-pills > li { + float: left; +} + +.nav-tabs > li > a, +.nav-pills > li > a { + padding-right: 12px; + padding-left: 12px; + margin-right: 2px; + line-height: 14px; +} + +.nav-tabs { + border-bottom: 1px solid #ddd; +} + +.nav-tabs > li { + margin-bottom: -1px; +} + +.nav-tabs > li > a { + padding-top: 8px; + padding-bottom: 8px; + line-height: 20px; + border: 1px solid transparent; + -webkit-border-radius: 4px 4px 0 0; + -moz-border-radius: 4px 4px 0 0; + border-radius: 4px 4px 0 0; +} + +.nav-tabs > li > a:hover { + border-color: #eeeeee #eeeeee #dddddd; +} + +.nav-tabs > .active > a, +.nav-tabs > .active > a:hover { + color: #555555; + cursor: default; + background-color: #ffffff; + border: 1px solid #ddd; + border-bottom-color: transparent; +} + +.nav-pills > li > a { + padding-top: 8px; + padding-bottom: 8px; + margin-top: 2px; + margin-bottom: 2px; + -webkit-border-radius: 5px; + -moz-border-radius: 5px; + border-radius: 5px; +} + +.nav-pills > .active > a, +.nav-pills > .active > a:hover { + color: #ffffff; + background-color: #0088cc; +} + +.nav-stacked > li { + float: none; +} + +.nav-stacked > li > a { + margin-right: 0; +} + +.nav-tabs.nav-stacked { + border-bottom: 0; +} + +.nav-tabs.nav-stacked > li > a { + border: 1px solid #ddd; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.nav-tabs.nav-stacked > li:first-child > a { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-topright: 4px; + -moz-border-radius-topleft: 4px; +} + +.nav-tabs.nav-stacked > li:last-child > a { + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -moz-border-radius-bottomright: 4px; + -moz-border-radius-bottomleft: 4px; +} + +.nav-tabs.nav-stacked > li > a:hover { + z-index: 2; + border-color: #ddd; +} + +.nav-pills.nav-stacked > li > a { + margin-bottom: 3px; +} + +.nav-pills.nav-stacked > li:last-child > a { + margin-bottom: 1px; +} + +.nav-tabs .dropdown-menu { + -webkit-border-radius: 0 0 6px 6px; + -moz-border-radius: 0 0 6px 6px; + border-radius: 0 0 6px 6px; +} + +.nav-pills .dropdown-menu { + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + +.nav .dropdown-toggle .caret { + margin-top: 6px; + border-top-color: #0088cc; + border-bottom-color: #0088cc; +} + +.nav .dropdown-toggle:hover .caret { + border-top-color: #005580; + border-bottom-color: #005580; +} + +/* move down carets for tabs */ + +.nav-tabs .dropdown-toggle .caret { + margin-top: 8px; +} + +.nav .active .dropdown-toggle .caret { + border-top-color: #fff; + border-bottom-color: #fff; +} + +.nav-tabs .active .dropdown-toggle .caret { + border-top-color: #555555; + border-bottom-color: #555555; +} + +.nav > .dropdown.active > a:hover { + cursor: pointer; +} + +.nav-tabs .open .dropdown-toggle, +.nav-pills .open .dropdown-toggle, +.nav > li.dropdown.open.active > a:hover { + color: #ffffff; + background-color: #999999; + border-color: #999999; +} + +.nav li.dropdown.open .caret, +.nav li.dropdown.open.active .caret, +.nav li.dropdown.open a:hover .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; + opacity: 1; + filter: alpha(opacity=100); +} + +.tabs-stacked .open > a:hover { + border-color: #999999; +} + +.tabbable { + *zoom: 1; +} + +.tabbable:before, +.tabbable:after { + display: table; + line-height: 0; + content: ""; +} + +.tabbable:after { + clear: both; +} + +.tab-content { + overflow: auto; +} + +.tabs-below > .nav-tabs, +.tabs-right > .nav-tabs, +.tabs-left > .nav-tabs { + border-bottom: 0; +} + +.tab-content > .tab-pane, +.pill-content > .pill-pane { + display: none; +} + +.tab-content > .active, +.pill-content > .active { + display: block; +} + +.tabs-below > .nav-tabs { + border-top: 1px solid #ddd; +} + +.tabs-below > .nav-tabs > li { + margin-top: -1px; + margin-bottom: 0; +} + +.tabs-below > .nav-tabs > li > a { + -webkit-border-radius: 0 0 4px 4px; + -moz-border-radius: 0 0 4px 4px; + border-radius: 0 0 4px 4px; +} + +.tabs-below > .nav-tabs > li > a:hover { + border-top-color: #ddd; + border-bottom-color: transparent; +} + +.tabs-below > .nav-tabs > .active > a, +.tabs-below > .nav-tabs > .active > a:hover { + border-color: transparent #ddd #ddd #ddd; +} + +.tabs-left > .nav-tabs > li, +.tabs-right > .nav-tabs > li { + float: none; +} + +.tabs-left > .nav-tabs > li > a, +.tabs-right > .nav-tabs > li > a { + min-width: 74px; + margin-right: 0; + margin-bottom: 3px; +} + +.tabs-left > .nav-tabs { + float: left; + margin-right: 19px; + border-right: 1px solid #ddd; +} + +.tabs-left > .nav-tabs > li > a { + margin-right: -1px; + -webkit-border-radius: 4px 0 0 4px; + -moz-border-radius: 4px 0 0 4px; + border-radius: 4px 0 0 4px; +} + +.tabs-left > .nav-tabs > li > a:hover { + border-color: #eeeeee #dddddd #eeeeee #eeeeee; +} + +.tabs-left > .nav-tabs .active > a, +.tabs-left > .nav-tabs .active > a:hover { + border-color: #ddd transparent #ddd #ddd; + *border-right-color: #ffffff; +} + +.tabs-right > .nav-tabs { + float: right; + margin-left: 19px; + border-left: 1px solid #ddd; +} + +.tabs-right > .nav-tabs > li > a { + margin-left: -1px; + -webkit-border-radius: 0 4px 4px 0; + -moz-border-radius: 0 4px 4px 0; + border-radius: 0 4px 4px 0; +} + +.tabs-right > .nav-tabs > li > a:hover { + border-color: #eeeeee #eeeeee #eeeeee #dddddd; +} + +.tabs-right > .nav-tabs .active > a, +.tabs-right > .nav-tabs .active > a:hover { + border-color: #ddd #ddd #ddd transparent; + *border-left-color: #ffffff; +} + +.nav > .disabled > a { + color: #999999; +} + +.nav > .disabled > a:hover { + text-decoration: none; + cursor: default; + background-color: transparent; +} + +.navbar { + *position: relative; + *z-index: 2; + margin-bottom: 20px; + overflow: visible; +} + +.navbar-inner { + min-height: 40px; + padding-right: 20px; + padding-left: 20px; + background-color: #fafafa; + background-image: -moz-linear-gradient(top, #ffffff, #f2f2f2); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ffffff), to(#f2f2f2)); + background-image: -webkit-linear-gradient(top, #ffffff, #f2f2f2); + background-image: -o-linear-gradient(top, #ffffff, #f2f2f2); + background-image: linear-gradient(to bottom, #ffffff, #f2f2f2); + background-repeat: repeat-x; + border: 1px solid #d4d4d4; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff2f2f2', GradientType=0); + *zoom: 1; + -webkit-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); + -moz-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); + box-shadow: 0 1px 4px rgba(0, 0, 0, 0.065); +} + +.navbar-inner:before, +.navbar-inner:after { + display: table; + line-height: 0; + content: ""; +} + +.navbar-inner:after { + clear: both; +} + +.navbar .container { + width: auto; +} + +.nav-collapse.collapse { + height: auto; + overflow: visible; +} + +.navbar .brand { + display: block; + float: left; + padding: 10px 20px 10px; + margin-left: -20px; + font-size: 20px; + font-weight: 200; + color: #777777; + text-shadow: 0 1px 0 #ffffff; +} + +.navbar .brand:hover { + text-decoration: none; +} + +.navbar-text { + margin-bottom: 0; + line-height: 40px; + color: #777777; +} + +.navbar-link { + color: #777777; +} + +.navbar-link:hover { + color: #333333; +} + +.navbar .divider-vertical { + height: 40px; + margin: 0 9px; + border-right: 1px solid #ffffff; + border-left: 1px solid #f2f2f2; +} + +.navbar .btn, +.navbar .btn-group { + margin-top: 5px; +} + +.navbar .btn-group .btn, +.navbar .input-prepend .btn, +.navbar .input-append .btn { + margin-top: 0; +} + +.navbar-form { + margin-bottom: 0; + *zoom: 1; +} + +.navbar-form:before, +.navbar-form:after { + display: table; + line-height: 0; + content: ""; +} + +.navbar-form:after { + clear: both; +} + +.navbar-form input, +.navbar-form select, +.navbar-form .radio, +.navbar-form .checkbox { + margin-top: 5px; +} + +.navbar-form input, +.navbar-form select, +.navbar-form .btn { + display: inline-block; + margin-bottom: 0; +} + +.navbar-form input[type="image"], +.navbar-form input[type="checkbox"], +.navbar-form input[type="radio"] { + margin-top: 3px; +} + +.navbar-form .input-append, +.navbar-form .input-prepend { + margin-top: 5px; + white-space: nowrap; +} + +.navbar-form .input-append input, +.navbar-form .input-prepend input { + margin-top: 0; +} + +.navbar-search { + position: relative; + float: left; + margin-top: 5px; + margin-bottom: 0; +} + +.navbar-search .search-query { + padding: 4px 14px; + margin-bottom: 0; + font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; + font-size: 13px; + font-weight: normal; + line-height: 1; + -webkit-border-radius: 15px; + -moz-border-radius: 15px; + border-radius: 15px; +} + +.navbar-static-top { + position: static; + margin-bottom: 0; +} + +.navbar-static-top .navbar-inner { + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.navbar-fixed-top, +.navbar-fixed-bottom { + position: fixed; + right: 0; + left: 0; + z-index: 1030; + margin-bottom: 0; +} + +.navbar-fixed-top .navbar-inner, +.navbar-static-top .navbar-inner { + border-width: 0 0 1px; +} + +.navbar-fixed-bottom .navbar-inner { + border-width: 1px 0 0; +} + +.navbar-fixed-top .navbar-inner, +.navbar-fixed-bottom .navbar-inner { + padding-right: 0; + padding-left: 0; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +.navbar-static-top .container, +.navbar-fixed-top .container, +.navbar-fixed-bottom .container { + width: 940px; +} + +.navbar-fixed-top { + top: 0; +} + +.navbar-fixed-top .navbar-inner, +.navbar-static-top .navbar-inner { + -webkit-box-shadow: 0 1px 10px rgba(0, 0, 0, 0.1); + -moz-box-shadow: 0 1px 10px rgba(0, 0, 0, 0.1); + box-shadow: 0 1px 10px rgba(0, 0, 0, 0.1); +} + +.navbar-fixed-bottom { + bottom: 0; +} + +.navbar-fixed-bottom .navbar-inner { + -webkit-box-shadow: 0 -1px 10px rgba(0, 0, 0, 0.1); + -moz-box-shadow: 0 -1px 10px rgba(0, 0, 0, 0.1); + box-shadow: 0 -1px 10px rgba(0, 0, 0, 0.1); +} + +.navbar .nav { + position: relative; + left: 0; + display: block; + float: left; + margin: 0 10px 0 0; +} + +.navbar .nav.pull-right { + float: right; + margin-right: 0; +} + +.navbar .nav > li { + float: left; +} + +.navbar .nav > li > a { + float: none; + padding: 10px 15px 10px; + color: #777777; + text-decoration: none; + text-shadow: 0 1px 0 #ffffff; +} + +.navbar .nav .dropdown-toggle .caret { + margin-top: 8px; +} + +.navbar .nav > li > a:focus, +.navbar .nav > li > a:hover { + color: #333333; + text-decoration: none; + background-color: transparent; +} + +.navbar .nav > .active > a, +.navbar .nav > .active > a:hover, +.navbar .nav > .active > a:focus { + color: #555555; + text-decoration: none; + background-color: #e5e5e5; + -webkit-box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); + -moz-box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); + box-shadow: inset 0 3px 8px rgba(0, 0, 0, 0.125); +} + +.navbar .btn-navbar { + display: none; + float: right; + padding: 7px 10px; + margin-right: 5px; + margin-left: 5px; + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #ededed; + *background-color: #e5e5e5; + background-image: -moz-linear-gradient(top, #f2f2f2, #e5e5e5); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#f2f2f2), to(#e5e5e5)); + background-image: -webkit-linear-gradient(top, #f2f2f2, #e5e5e5); + background-image: -o-linear-gradient(top, #f2f2f2, #e5e5e5); + background-image: linear-gradient(to bottom, #f2f2f2, #e5e5e5); + background-repeat: repeat-x; + border-color: #e5e5e5 #e5e5e5 #bfbfbf; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2f2f2', endColorstr='#ffe5e5e5', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); + -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); + -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); + box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.075); +} + +.navbar .btn-navbar:hover, +.navbar .btn-navbar:active, +.navbar .btn-navbar.active, +.navbar .btn-navbar.disabled, +.navbar .btn-navbar[disabled] { + color: #ffffff; + background-color: #e5e5e5; + *background-color: #d9d9d9; +} + +.navbar .btn-navbar:active, +.navbar .btn-navbar.active { + background-color: #cccccc \9; +} + +.navbar .btn-navbar .icon-bar { + display: block; + width: 18px; + height: 2px; + background-color: #f5f5f5; + -webkit-border-radius: 1px; + -moz-border-radius: 1px; + border-radius: 1px; + -webkit-box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); + -moz-box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); + box-shadow: 0 1px 0 rgba(0, 0, 0, 0.25); +} + +.btn-navbar .icon-bar + .icon-bar { + margin-top: 3px; +} + +.navbar .nav > li > .dropdown-menu:before { + position: absolute; + top: -7px; + left: 9px; + display: inline-block; + border-right: 7px solid transparent; + border-bottom: 7px solid #ccc; + border-left: 7px solid transparent; + border-bottom-color: rgba(0, 0, 0, 0.2); + content: ''; +} + +.navbar .nav > li > .dropdown-menu:after { + position: absolute; + top: -6px; + left: 10px; + display: inline-block; + border-right: 6px solid transparent; + border-bottom: 6px solid #ffffff; + border-left: 6px solid transparent; + content: ''; +} + +.navbar-fixed-bottom .nav > li > .dropdown-menu:before { + top: auto; + bottom: -7px; + border-top: 7px solid #ccc; + border-bottom: 0; + border-top-color: rgba(0, 0, 0, 0.2); +} + +.navbar-fixed-bottom .nav > li > .dropdown-menu:after { + top: auto; + bottom: -6px; + border-top: 6px solid #ffffff; + border-bottom: 0; +} + +.navbar .nav li.dropdown > a:hover .caret { + border-top-color: #555555; + border-bottom-color: #555555; +} + +.navbar .nav li.dropdown.open > .dropdown-toggle, +.navbar .nav li.dropdown.active > .dropdown-toggle, +.navbar .nav li.dropdown.open.active > .dropdown-toggle { + color: #555555; + background-color: #e5e5e5; +} + +.navbar .nav li.dropdown > .dropdown-toggle .caret { + border-top-color: #777777; + border-bottom-color: #777777; +} + +.navbar .nav li.dropdown.open > .dropdown-toggle .caret, +.navbar .nav li.dropdown.active > .dropdown-toggle .caret, +.navbar .nav li.dropdown.open.active > .dropdown-toggle .caret { + border-top-color: #555555; + border-bottom-color: #555555; +} + +.navbar .pull-right > li > .dropdown-menu, +.navbar .nav > li > .dropdown-menu.pull-right { + right: 0; + left: auto; +} + +.navbar .pull-right > li > .dropdown-menu:before, +.navbar .nav > li > .dropdown-menu.pull-right:before { + right: 12px; + left: auto; +} + +.navbar .pull-right > li > .dropdown-menu:after, +.navbar .nav > li > .dropdown-menu.pull-right:after { + right: 13px; + left: auto; +} + +.navbar .pull-right > li > .dropdown-menu .dropdown-menu, +.navbar .nav > li > .dropdown-menu.pull-right .dropdown-menu { + right: 100%; + left: auto; + margin-right: -1px; + margin-left: 0; + -webkit-border-radius: 6px 0 6px 6px; + -moz-border-radius: 6px 0 6px 6px; + border-radius: 6px 0 6px 6px; +} + +.navbar-inverse .navbar-inner { + background-color: #1b1b1b; + background-image: -moz-linear-gradient(top, #222222, #111111); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#222222), to(#111111)); + background-image: -webkit-linear-gradient(top, #222222, #111111); + background-image: -o-linear-gradient(top, #222222, #111111); + background-image: linear-gradient(to bottom, #222222, #111111); + background-repeat: repeat-x; + border-color: #252525; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff222222', endColorstr='#ff111111', GradientType=0); +} + +.navbar-inverse .brand, +.navbar-inverse .nav > li > a { + color: #999999; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); +} + +.navbar-inverse .brand:hover, +.navbar-inverse .nav > li > a:hover { + color: #ffffff; +} + +.navbar-inverse .brand { + color: #999999; +} + +.navbar-inverse .navbar-text { + color: #999999; +} + +.navbar-inverse .nav > li > a:focus, +.navbar-inverse .nav > li > a:hover { + color: #ffffff; + background-color: transparent; +} + +.navbar-inverse .nav .active > a, +.navbar-inverse .nav .active > a:hover, +.navbar-inverse .nav .active > a:focus { + color: #ffffff; + background-color: #111111; +} + +.navbar-inverse .navbar-link { + color: #999999; +} + +.navbar-inverse .navbar-link:hover { + color: #ffffff; +} + +.navbar-inverse .divider-vertical { + border-right-color: #222222; + border-left-color: #111111; +} + +.navbar-inverse .nav li.dropdown.open > .dropdown-toggle, +.navbar-inverse .nav li.dropdown.active > .dropdown-toggle, +.navbar-inverse .nav li.dropdown.open.active > .dropdown-toggle { + color: #ffffff; + background-color: #111111; +} + +.navbar-inverse .nav li.dropdown > a:hover .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; +} + +.navbar-inverse .nav li.dropdown > .dropdown-toggle .caret { + border-top-color: #999999; + border-bottom-color: #999999; +} + +.navbar-inverse .nav li.dropdown.open > .dropdown-toggle .caret, +.navbar-inverse .nav li.dropdown.active > .dropdown-toggle .caret, +.navbar-inverse .nav li.dropdown.open.active > .dropdown-toggle .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; +} + +.navbar-inverse .navbar-search .search-query { + color: #ffffff; + background-color: #515151; + border-color: #111111; + -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); + -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); + box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1), 0 1px 0 rgba(255, 255, 255, 0.15); + -webkit-transition: none; + -moz-transition: none; + -o-transition: none; + transition: none; +} + +.navbar-inverse .navbar-search .search-query:-moz-placeholder { + color: #cccccc; +} + +.navbar-inverse .navbar-search .search-query:-ms-input-placeholder { + color: #cccccc; +} + +.navbar-inverse .navbar-search .search-query::-webkit-input-placeholder { + color: #cccccc; +} + +.navbar-inverse .navbar-search .search-query:focus, +.navbar-inverse .navbar-search .search-query.focused { + padding: 5px 15px; + color: #333333; + text-shadow: 0 1px 0 #ffffff; + background-color: #ffffff; + border: 0; + outline: 0; + -webkit-box-shadow: 0 0 3px rgba(0, 0, 0, 0.15); + -moz-box-shadow: 0 0 3px rgba(0, 0, 0, 0.15); + box-shadow: 0 0 3px rgba(0, 0, 0, 0.15); +} + +.navbar-inverse .btn-navbar { + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #0e0e0e; + *background-color: #040404; + background-image: -moz-linear-gradient(top, #151515, #040404); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#151515), to(#040404)); + background-image: -webkit-linear-gradient(top, #151515, #040404); + background-image: -o-linear-gradient(top, #151515, #040404); + background-image: linear-gradient(to bottom, #151515, #040404); + background-repeat: repeat-x; + border-color: #040404 #040404 #000000; + border-color: rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.1) rgba(0, 0, 0, 0.25); + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff151515', endColorstr='#ff040404', GradientType=0); + filter: progid:DXImageTransform.Microsoft.gradient(enabled=false); +} + +.navbar-inverse .btn-navbar:hover, +.navbar-inverse .btn-navbar:active, +.navbar-inverse .btn-navbar.active, +.navbar-inverse .btn-navbar.disabled, +.navbar-inverse .btn-navbar[disabled] { + color: #ffffff; + background-color: #040404; + *background-color: #000000; +} + +.navbar-inverse .btn-navbar:active, +.navbar-inverse .btn-navbar.active { + background-color: #000000 \9; +} + +.breadcrumb { + padding: 8px 15px; + margin: 0 0 20px; + list-style: none; + background-color: #f5f5f5; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.breadcrumb > li { + display: inline-block; + *display: inline; + text-shadow: 0 1px 0 #ffffff; + *zoom: 1; +} + +.breadcrumb > li > .divider { + padding: 0 5px; + color: #ccc; +} + +.breadcrumb > .active { + color: #999999; +} + +.pagination { + margin: 20px 0; +} + +.pagination ul { + display: inline-block; + *display: inline; + margin-bottom: 0; + margin-left: 0; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + *zoom: 1; + -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); + -moz-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); + box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); +} + +.pagination ul > li { + display: inline; +} + +.pagination ul > li > a, +.pagination ul > li > span { + float: left; + padding: 4px 12px; + line-height: 20px; + text-decoration: none; + background-color: #ffffff; + border: 1px solid #dddddd; + border-left-width: 0; +} + +.pagination ul > li > a:hover, +.pagination ul > .active > a, +.pagination ul > .active > span { + background-color: #f5f5f5; +} + +.pagination ul > .active > a, +.pagination ul > .active > span { + color: #999999; + cursor: default; +} + +.pagination ul > .disabled > span, +.pagination ul > .disabled > a, +.pagination ul > .disabled > a:hover { + color: #999999; + cursor: default; + background-color: transparent; +} + +.pagination ul > li:first-child > a, +.pagination ul > li:first-child > span { + border-left-width: 1px; + -webkit-border-bottom-left-radius: 4px; + border-bottom-left-radius: 4px; + -webkit-border-top-left-radius: 4px; + border-top-left-radius: 4px; + -moz-border-radius-bottomleft: 4px; + -moz-border-radius-topleft: 4px; +} + +.pagination ul > li:last-child > a, +.pagination ul > li:last-child > span { + -webkit-border-top-right-radius: 4px; + border-top-right-radius: 4px; + -webkit-border-bottom-right-radius: 4px; + border-bottom-right-radius: 4px; + -moz-border-radius-topright: 4px; + -moz-border-radius-bottomright: 4px; +} + +.pagination-centered { + text-align: center; +} + +.pagination-right { + text-align: right; +} + +.pagination-large ul > li > a, +.pagination-large ul > li > span { + padding: 11px 19px; + font-size: 17.5px; +} + +.pagination-large ul > li:first-child > a, +.pagination-large ul > li:first-child > span { + -webkit-border-bottom-left-radius: 6px; + border-bottom-left-radius: 6px; + -webkit-border-top-left-radius: 6px; + border-top-left-radius: 6px; + -moz-border-radius-bottomleft: 6px; + -moz-border-radius-topleft: 6px; +} + +.pagination-large ul > li:last-child > a, +.pagination-large ul > li:last-child > span { + -webkit-border-top-right-radius: 6px; + border-top-right-radius: 6px; + -webkit-border-bottom-right-radius: 6px; + border-bottom-right-radius: 6px; + -moz-border-radius-topright: 6px; + -moz-border-radius-bottomright: 6px; +} + +.pagination-mini ul > li:first-child > a, +.pagination-small ul > li:first-child > a, +.pagination-mini ul > li:first-child > span, +.pagination-small ul > li:first-child > span { + -webkit-border-bottom-left-radius: 3px; + border-bottom-left-radius: 3px; + -webkit-border-top-left-radius: 3px; + border-top-left-radius: 3px; + -moz-border-radius-bottomleft: 3px; + -moz-border-radius-topleft: 3px; +} + +.pagination-mini ul > li:last-child > a, +.pagination-small ul > li:last-child > a, +.pagination-mini ul > li:last-child > span, +.pagination-small ul > li:last-child > span { + -webkit-border-top-right-radius: 3px; + border-top-right-radius: 3px; + -webkit-border-bottom-right-radius: 3px; + border-bottom-right-radius: 3px; + -moz-border-radius-topright: 3px; + -moz-border-radius-bottomright: 3px; +} + +.pagination-small ul > li > a, +.pagination-small ul > li > span { + padding: 2px 10px; + font-size: 11.9px; +} + +.pagination-mini ul > li > a, +.pagination-mini ul > li > span { + padding: 0 6px; + font-size: 10.5px; +} + +.pager { + margin: 20px 0; + text-align: center; + list-style: none; + *zoom: 1; +} + +.pager:before, +.pager:after { + display: table; + line-height: 0; + content: ""; +} + +.pager:after { + clear: both; +} + +.pager li { + display: inline; +} + +.pager li > a, +.pager li > span { + display: inline-block; + padding: 5px 14px; + background-color: #fff; + border: 1px solid #ddd; + -webkit-border-radius: 15px; + -moz-border-radius: 15px; + border-radius: 15px; +} + +.pager li > a:hover { + text-decoration: none; + background-color: #f5f5f5; +} + +.pager .next > a, +.pager .next > span { + float: right; +} + +.pager .previous > a, +.pager .previous > span { + float: left; +} + +.pager .disabled > a, +.pager .disabled > a:hover, +.pager .disabled > span { + color: #999999; + cursor: default; + background-color: #fff; +} + +.modal-backdrop { + position: fixed; + top: 0; + right: 0; + bottom: 0; + left: 0; + z-index: 1040; + background-color: #000000; +} + +.modal-backdrop.fade { + opacity: 0; +} + +.modal-backdrop, +.modal-backdrop.fade.in { + opacity: 0.8; + filter: alpha(opacity=80); +} + +.modal { + position: fixed; + top: 10%; + left: 50%; + z-index: 1050; + width: 560px; + margin-left: -280px; + background-color: #ffffff; + border: 1px solid #999; + border: 1px solid rgba(0, 0, 0, 0.3); + *border: 1px solid #999; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + outline: none; + -webkit-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); + -moz-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); + box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3); + -webkit-background-clip: padding-box; + -moz-background-clip: padding-box; + background-clip: padding-box; +} + +.modal.fade { + top: -25%; + -webkit-transition: opacity 0.3s linear, top 0.3s ease-out; + -moz-transition: opacity 0.3s linear, top 0.3s ease-out; + -o-transition: opacity 0.3s linear, top 0.3s ease-out; + transition: opacity 0.3s linear, top 0.3s ease-out; +} + +.modal.fade.in { + top: 10%; +} + +.modal-header { + padding: 9px 15px; + border-bottom: 1px solid #eee; +} + +.modal-header .close { + margin-top: 2px; +} + +.modal-header h3 { + margin: 0; + line-height: 30px; +} + +.modal-body { + position: relative; + max-height: 400px; + padding: 15px; + overflow-y: auto; +} + +.modal-form { + margin-bottom: 0; +} + +.modal-footer { + padding: 14px 15px 15px; + margin-bottom: 0; + text-align: right; + background-color: #f5f5f5; + border-top: 1px solid #ddd; + -webkit-border-radius: 0 0 6px 6px; + -moz-border-radius: 0 0 6px 6px; + border-radius: 0 0 6px 6px; + *zoom: 1; + -webkit-box-shadow: inset 0 1px 0 #ffffff; + -moz-box-shadow: inset 0 1px 0 #ffffff; + box-shadow: inset 0 1px 0 #ffffff; +} + +.modal-footer:before, +.modal-footer:after { + display: table; + line-height: 0; + content: ""; +} + +.modal-footer:after { + clear: both; +} + +.modal-footer .btn + .btn { + margin-bottom: 0; + margin-left: 5px; +} + +.modal-footer .btn-group .btn + .btn { + margin-left: -1px; +} + +.modal-footer .btn-block + .btn-block { + margin-left: 0; +} + +.tooltip { + position: absolute; + z-index: 1030; + display: block; + padding: 5px; + font-size: 11px; + opacity: 0; + filter: alpha(opacity=0); + visibility: visible; +} + +.tooltip.in { + opacity: 0.8; + filter: alpha(opacity=80); +} + +.tooltip.top { + margin-top: -3px; +} + +.tooltip.right { + margin-left: 3px; +} + +.tooltip.bottom { + margin-top: 3px; +} + +.tooltip.left { + margin-left: -3px; +} + +.tooltip-inner { + max-width: 200px; + padding: 3px 8px; + color: #ffffff; + text-align: center; + text-decoration: none; + background-color: #000000; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.tooltip-arrow { + position: absolute; + width: 0; + height: 0; + border-color: transparent; + border-style: solid; +} + +.tooltip.top .tooltip-arrow { + bottom: 0; + left: 50%; + margin-left: -5px; + border-top-color: #000000; + border-width: 5px 5px 0; +} + +.tooltip.right .tooltip-arrow { + top: 50%; + left: 0; + margin-top: -5px; + border-right-color: #000000; + border-width: 5px 5px 5px 0; +} + +.tooltip.left .tooltip-arrow { + top: 50%; + right: 0; + margin-top: -5px; + border-left-color: #000000; + border-width: 5px 0 5px 5px; +} + +.tooltip.bottom .tooltip-arrow { + top: 0; + left: 50%; + margin-left: -5px; + border-bottom-color: #000000; + border-width: 0 5px 5px; +} + +.popover { + position: absolute; + top: 0; + left: 0; + z-index: 1010; + display: none; + width: 236px; + padding: 1px; + text-align: left; + white-space: normal; + background-color: #ffffff; + border: 1px solid #ccc; + border: 1px solid rgba(0, 0, 0, 0.2); + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; + -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -moz-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2); + -webkit-background-clip: padding-box; + -moz-background-clip: padding; + background-clip: padding-box; +} + +.popover.top { + margin-top: -10px; +} + +.popover.right { + margin-left: 10px; +} + +.popover.bottom { + margin-top: 10px; +} + +.popover.left { + margin-left: -10px; +} + +.popover-title { + padding: 8px 14px; + margin: 0; + font-size: 14px; + font-weight: normal; + line-height: 18px; + background-color: #f7f7f7; + border-bottom: 1px solid #ebebeb; + -webkit-border-radius: 5px 5px 0 0; + -moz-border-radius: 5px 5px 0 0; + border-radius: 5px 5px 0 0; +} + +.popover-content { + padding: 9px 14px; +} + +.popover .arrow, +.popover .arrow:after { + position: absolute; + display: block; + width: 0; + height: 0; + border-color: transparent; + border-style: solid; +} + +.popover .arrow { + border-width: 11px; +} + +.popover .arrow:after { + border-width: 10px; + content: ""; +} + +.popover.top .arrow { + bottom: -11px; + left: 50%; + margin-left: -11px; + border-top-color: #999; + border-top-color: rgba(0, 0, 0, 0.25); + border-bottom-width: 0; +} + +.popover.top .arrow:after { + bottom: 1px; + margin-left: -10px; + border-top-color: #ffffff; + border-bottom-width: 0; +} + +.popover.right .arrow { + top: 50%; + left: -11px; + margin-top: -11px; + border-right-color: #999; + border-right-color: rgba(0, 0, 0, 0.25); + border-left-width: 0; +} + +.popover.right .arrow:after { + bottom: -10px; + left: 1px; + border-right-color: #ffffff; + border-left-width: 0; +} + +.popover.bottom .arrow { + top: -11px; + left: 50%; + margin-left: -11px; + border-bottom-color: #999; + border-bottom-color: rgba(0, 0, 0, 0.25); + border-top-width: 0; +} + +.popover.bottom .arrow:after { + top: 1px; + margin-left: -10px; + border-bottom-color: #ffffff; + border-top-width: 0; +} + +.popover.left .arrow { + top: 50%; + right: -11px; + margin-top: -11px; + border-left-color: #999; + border-left-color: rgba(0, 0, 0, 0.25); + border-right-width: 0; +} + +.popover.left .arrow:after { + right: 1px; + bottom: -10px; + border-left-color: #ffffff; + border-right-width: 0; +} + +.thumbnails { + margin-left: -20px; + list-style: none; + *zoom: 1; +} + +.thumbnails:before, +.thumbnails:after { + display: table; + line-height: 0; + content: ""; +} + +.thumbnails:after { + clear: both; +} + +.row-fluid .thumbnails { + margin-left: 0; +} + +.thumbnails > li { + float: left; + margin-bottom: 20px; + margin-left: 20px; +} + +.thumbnail { + display: block; + padding: 4px; + line-height: 20px; + border: 1px solid #ddd; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + -webkit-box-shadow: 0 1px 3px rgba(0, 0, 0, 0.055); + -moz-box-shadow: 0 1px 3px rgba(0, 0, 0, 0.055); + box-shadow: 0 1px 3px rgba(0, 0, 0, 0.055); + -webkit-transition: all 0.2s ease-in-out; + -moz-transition: all 0.2s ease-in-out; + -o-transition: all 0.2s ease-in-out; + transition: all 0.2s ease-in-out; +} + +a.thumbnail:hover { + border-color: #0088cc; + -webkit-box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); + -moz-box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); + box-shadow: 0 1px 4px rgba(0, 105, 214, 0.25); +} + +.thumbnail > img { + display: block; + max-width: 100%; + margin-right: auto; + margin-left: auto; +} + +.thumbnail .caption { + padding: 9px; + color: #555555; +} + +.media, +.media-body { + overflow: hidden; + *overflow: visible; + zoom: 1; +} + +.media, +.media .media { + margin-top: 15px; +} + +.media:first-child { + margin-top: 0; +} + +.media-object { + display: block; +} + +.media-heading { + margin: 0 0 5px; +} + +.media .pull-left { + margin-right: 10px; +} + +.media .pull-right { + margin-left: 10px; +} + +.media-list { + margin-left: 0; + list-style: none; +} + +.label, +.badge { + display: inline-block; + padding: 2px 4px; + font-size: 11.844px; + font-weight: bold; + line-height: 14px; + color: #ffffff; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + white-space: nowrap; + vertical-align: baseline; + background-color: #999999; +} + +.label { + -webkit-border-radius: 3px; + -moz-border-radius: 3px; + border-radius: 3px; +} + +.badge { + padding-right: 9px; + padding-left: 9px; + -webkit-border-radius: 9px; + -moz-border-radius: 9px; + border-radius: 9px; +} + +.label:empty, +.badge:empty { + display: none; +} + +a.label:hover, +a.badge:hover { + color: #ffffff; + text-decoration: none; + cursor: pointer; +} + +.label-important, +.badge-important { + background-color: #b94a48; +} + +.label-important[href], +.badge-important[href] { + background-color: #953b39; +} + +.label-warning, +.badge-warning { + background-color: #f89406; +} + +.label-warning[href], +.badge-warning[href] { + background-color: #c67605; +} + +.label-success, +.badge-success { + background-color: #468847; +} + +.label-success[href], +.badge-success[href] { + background-color: #356635; +} + +.label-info, +.badge-info { + background-color: #3a87ad; +} + +.label-info[href], +.badge-info[href] { + background-color: #2d6987; +} + +.label-inverse, +.badge-inverse { + background-color: #333333; +} + +.label-inverse[href], +.badge-inverse[href] { + background-color: #1a1a1a; +} + +.btn .label, +.btn .badge { + position: relative; + top: -1px; +} + +.btn-mini .label, +.btn-mini .badge { + top: 0; +} + +@-webkit-keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +@-moz-keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +@-ms-keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +@-o-keyframes progress-bar-stripes { + from { + background-position: 0 0; + } + to { + background-position: 40px 0; + } +} + +@keyframes progress-bar-stripes { + from { + background-position: 40px 0; + } + to { + background-position: 0 0; + } +} + +.progress { + height: 20px; + margin-bottom: 20px; + overflow: hidden; + background-color: #f7f7f7; + background-image: -moz-linear-gradient(top, #f5f5f5, #f9f9f9); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#f5f5f5), to(#f9f9f9)); + background-image: -webkit-linear-gradient(top, #f5f5f5, #f9f9f9); + background-image: -o-linear-gradient(top, #f5f5f5, #f9f9f9); + background-image: linear-gradient(to bottom, #f5f5f5, #f9f9f9); + background-repeat: repeat-x; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#fff9f9f9', GradientType=0); + -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); + -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); + box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1); +} + +.progress .bar { + float: left; + width: 0; + height: 100%; + font-size: 12px; + color: #ffffff; + text-align: center; + text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25); + background-color: #0e90d2; + background-image: -moz-linear-gradient(top, #149bdf, #0480be); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#149bdf), to(#0480be)); + background-image: -webkit-linear-gradient(top, #149bdf, #0480be); + background-image: -o-linear-gradient(top, #149bdf, #0480be); + background-image: linear-gradient(to bottom, #149bdf, #0480be); + background-repeat: repeat-x; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff149bdf', endColorstr='#ff0480be', GradientType=0); + -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); + -moz-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); + box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15); + -webkit-box-sizing: border-box; + -moz-box-sizing: border-box; + box-sizing: border-box; + -webkit-transition: width 0.6s ease; + -moz-transition: width 0.6s ease; + -o-transition: width 0.6s ease; + transition: width 0.6s ease; +} + +.progress .bar + .bar { + -webkit-box-shadow: inset 1px 0 0 rgba(0, 0, 0, 0.15), inset 0 -1px 0 rgba(0, 0, 0, 0.15); + -moz-box-shadow: inset 1px 0 0 rgba(0, 0, 0, 0.15), inset 0 -1px 0 rgba(0, 0, 0, 0.15); + box-shadow: inset 1px 0 0 rgba(0, 0, 0, 0.15), inset 0 -1px 0 rgba(0, 0, 0, 0.15); +} + +.progress-striped .bar { + background-color: #149bdf; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + -webkit-background-size: 40px 40px; + -moz-background-size: 40px 40px; + -o-background-size: 40px 40px; + background-size: 40px 40px; +} + +.progress.active .bar { + -webkit-animation: progress-bar-stripes 2s linear infinite; + -moz-animation: progress-bar-stripes 2s linear infinite; + -ms-animation: progress-bar-stripes 2s linear infinite; + -o-animation: progress-bar-stripes 2s linear infinite; + animation: progress-bar-stripes 2s linear infinite; +} + +.progress-danger .bar, +.progress .bar-danger { + background-color: #dd514c; + background-image: -moz-linear-gradient(top, #ee5f5b, #c43c35); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#ee5f5b), to(#c43c35)); + background-image: -webkit-linear-gradient(top, #ee5f5b, #c43c35); + background-image: -o-linear-gradient(top, #ee5f5b, #c43c35); + background-image: linear-gradient(to bottom, #ee5f5b, #c43c35); + background-repeat: repeat-x; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffee5f5b', endColorstr='#ffc43c35', GradientType=0); +} + +.progress-danger.progress-striped .bar, +.progress-striped .bar-danger { + background-color: #ee5f5b; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.progress-success .bar, +.progress .bar-success { + background-color: #5eb95e; + background-image: -moz-linear-gradient(top, #62c462, #57a957); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#62c462), to(#57a957)); + background-image: -webkit-linear-gradient(top, #62c462, #57a957); + background-image: -o-linear-gradient(top, #62c462, #57a957); + background-image: linear-gradient(to bottom, #62c462, #57a957); + background-repeat: repeat-x; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff62c462', endColorstr='#ff57a957', GradientType=0); +} + +.progress-success.progress-striped .bar, +.progress-striped .bar-success { + background-color: #62c462; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.progress-info .bar, +.progress .bar-info { + background-color: #4bb1cf; + background-image: -moz-linear-gradient(top, #5bc0de, #339bb9); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#5bc0de), to(#339bb9)); + background-image: -webkit-linear-gradient(top, #5bc0de, #339bb9); + background-image: -o-linear-gradient(top, #5bc0de, #339bb9); + background-image: linear-gradient(to bottom, #5bc0de, #339bb9); + background-repeat: repeat-x; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff339bb9', GradientType=0); +} + +.progress-info.progress-striped .bar, +.progress-striped .bar-info { + background-color: #5bc0de; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.progress-warning .bar, +.progress .bar-warning { + background-color: #faa732; + background-image: -moz-linear-gradient(top, #fbb450, #f89406); + background-image: -webkit-gradient(linear, 0 0, 0 100%, from(#fbb450), to(#f89406)); + background-image: -webkit-linear-gradient(top, #fbb450, #f89406); + background-image: -o-linear-gradient(top, #fbb450, #f89406); + background-image: linear-gradient(to bottom, #fbb450, #f89406); + background-repeat: repeat-x; + filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffbb450', endColorstr='#fff89406', GradientType=0); +} + +.progress-warning.progress-striped .bar, +.progress-striped .bar-warning { + background-color: #fbb450; + background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent)); + background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); + background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent); +} + +.accordion { + margin-bottom: 20px; +} + +.accordion-group { + margin-bottom: 2px; + border: 1px solid #e5e5e5; + -webkit-border-radius: 4px; + -moz-border-radius: 4px; + border-radius: 4px; +} + +.accordion-heading { + border-bottom: 0; +} + +.accordion-heading .accordion-toggle { + display: block; + padding: 8px 15px; +} + +.accordion-toggle { + cursor: pointer; +} + +.accordion-inner { + padding: 9px 15px; + border-top: 1px solid #e5e5e5; +} + +.carousel { + position: relative; + margin-bottom: 20px; + line-height: 1; +} + +.carousel-inner { + position: relative; + width: 100%; + overflow: hidden; +} + +.carousel-inner > .item { + position: relative; + display: none; + -webkit-transition: 0.6s ease-in-out left; + -moz-transition: 0.6s ease-in-out left; + -o-transition: 0.6s ease-in-out left; + transition: 0.6s ease-in-out left; +} + +.carousel-inner > .item > img { + display: block; + line-height: 1; +} + +.carousel-inner > .active, +.carousel-inner > .next, +.carousel-inner > .prev { + display: block; +} + +.carousel-inner > .active { + left: 0; +} + +.carousel-inner > .next, +.carousel-inner > .prev { + position: absolute; + top: 0; + width: 100%; +} + +.carousel-inner > .next { + left: 100%; +} + +.carousel-inner > .prev { + left: -100%; +} + +.carousel-inner > .next.left, +.carousel-inner > .prev.right { + left: 0; +} + +.carousel-inner > .active.left { + left: -100%; +} + +.carousel-inner > .active.right { + left: 100%; +} + +.carousel-control { + position: absolute; + top: 40%; + left: 15px; + width: 40px; + height: 40px; + margin-top: -20px; + font-size: 60px; + font-weight: 100; + line-height: 30px; + color: #ffffff; + text-align: center; + background: #222222; + border: 3px solid #ffffff; + -webkit-border-radius: 23px; + -moz-border-radius: 23px; + border-radius: 23px; + opacity: 0.5; + filter: alpha(opacity=50); +} + +.carousel-control.right { + right: 15px; + left: auto; +} + +.carousel-control:hover { + color: #ffffff; + text-decoration: none; + opacity: 0.9; + filter: alpha(opacity=90); +} + +.carousel-caption { + position: absolute; + right: 0; + bottom: 0; + left: 0; + padding: 15px; + background: #333333; + background: rgba(0, 0, 0, 0.75); +} + +.carousel-caption h4, +.carousel-caption p { + line-height: 20px; + color: #ffffff; +} + +.carousel-caption h4 { + margin: 0 0 5px; +} + +.carousel-caption p { + margin-bottom: 0; +} + +.hero-unit { + padding: 60px; + margin-bottom: 30px; + font-size: 18px; + font-weight: 200; + line-height: 30px; + color: inherit; + background-color: #eeeeee; + -webkit-border-radius: 6px; + -moz-border-radius: 6px; + border-radius: 6px; +} + +.hero-unit h1 { + margin-bottom: 0; + font-size: 60px; + line-height: 1; + letter-spacing: -1px; + color: inherit; +} + +.hero-unit li { + line-height: 30px; +} + +.pull-right { + float: right; +} + +.pull-left { + float: left; +} + +.hide { + display: none; +} + +.show { + display: block; +} + +.invisible { + visibility: hidden; +} + +.affix { + position: fixed; +} diff --git a/css/bootstrap/img/glyphicons-halflings-white.png b/css/bootstrap/img/glyphicons-halflings-white.png new file mode 100644 index 0000000..3bf6484 Binary files /dev/null and b/css/bootstrap/img/glyphicons-halflings-white.png differ diff --git a/css/bootstrap/img/glyphicons-halflings.png b/css/bootstrap/img/glyphicons-halflings.png new file mode 100644 index 0000000..a996999 Binary files /dev/null and b/css/bootstrap/img/glyphicons-halflings.png differ diff --git a/css/lesson.css b/css/lesson.css new file mode 100644 index 0000000..b97b17a --- /dev/null +++ b/css/lesson.css @@ -0,0 +1,76 @@ +/* Comments in code. */ +.comment { + color: purple; +} + +/* Highlighted changes in code. */ +.highlight { + background-color: mistyrose; +} + +/* Manual input. */ +.in { + color: darkgreen; + margin-left: 20px; +} + +div.in:before { + content: ""; + display: block; + width: 0; + height: 0; + border-top: 12px solid transparent; + border-bottom: 12px solid transparent; + border-left: 12px solid #727272; + position: relative; + left:-16px; + top:10px; + float:left; +} + +/* Program output. */ +.out { + color: darkblue; + margin-left: 20px; +} + +div.out:before { + content: ""; + display: block; + width: 0; + height: 0; + border-top: 12px solid transparent; + border-bottom: 12px solid transparent; + border-right: 12px solid #727272; + position: relative; + left:-16px; + top:10px; + float:left; +} + +/* Error output. */ +.err { + color: darkred; + font-style: italic; + font-weight: bold; +} + +/* Explanatory call-out boxes. */ +div.box { + background-color: lightgray; +} + +/* Challenge questions. */ +div.challenges {} + +/* Key points in summary. */ +div.keypoints {} + +/* Main lesson. */ +div.lesson {} + +/* Learning objectives. */ +div.objectives {} + +/* Continuation paragraph. */ +p.continue {} diff --git a/css/pygments/friendly.css b/css/pygments/friendly.css new file mode 100644 index 0000000..23f09db --- /dev/null +++ b/css/pygments/friendly.css @@ -0,0 +1,61 @@ +.hll { background-color: #ffffcc } +.c { color: #60a0b0; font-style: italic } /* Comment */ +.err { border: 1px solid #FF0000 } /* Error */ +.k { color: #007020; font-weight: bold } /* Keyword */ +.o { color: #666666 } /* Operator */ +.cm { color: #60a0b0; font-style: italic } /* Comment.Multiline */ +.cp { color: #007020 } /* Comment.Preproc */ +.c1 { color: #60a0b0; font-style: italic } /* Comment.Single */ +.cs { color: #60a0b0; background-color: #fff0f0 } /* Comment.Special */ +.gd { color: #A00000 } /* Generic.Deleted */ +.ge { font-style: italic } /* Generic.Emph */ +.gr { color: #FF0000 } /* Generic.Error */ +.gh { color: #000080; font-weight: bold } /* Generic.Heading */ +.gi { color: #00A000 } /* Generic.Inserted */ +.go { color: #888888 } /* Generic.Output */ +.gp { color: #c65d09; font-weight: bold } /* Generic.Prompt */ +.gs { font-weight: bold } /* Generic.Strong */ +.gu { color: #800080; font-weight: bold } /* Generic.Subheading */ +.gt { color: #0044DD } /* Generic.Traceback */ +.kc { color: #007020; font-weight: bold } /* Keyword.Constant */ +.kd { color: #007020; font-weight: bold } /* Keyword.Declaration */ +.kn { color: #007020; font-weight: bold } /* Keyword.Namespace */ +.kp { color: #007020 } /* Keyword.Pseudo */ +.kr { color: #007020; font-weight: bold } /* Keyword.Reserved */ +.kt { color: #902000 } /* Keyword.Type */ +.m { color: #40a070 } /* Literal.Number */ +.s { color: #4070a0 } /* Literal.String */ +.na { color: #4070a0 } /* Name.Attribute */ +.nb { color: #007020 } /* Name.Builtin */ +.nc { color: #0e84b5; font-weight: bold } /* Name.Class */ +.no { color: #60add5 } /* Name.Constant */ +.nd { color: #555555; font-weight: bold } /* Name.Decorator */ +.ni { color: #d55537; font-weight: bold } /* Name.Entity */ +.ne { color: #007020 } /* Name.Exception */ +.nf { color: #06287e } /* Name.Function */ +.nl { color: #002070; font-weight: bold } /* Name.Label */ +.nn { color: #0e84b5; font-weight: bold } /* Name.Namespace */ +.nt { color: #062873; font-weight: bold } /* Name.Tag */ +.nv { color: #bb60d5 } /* Name.Variable */ +.ow { color: #007020; font-weight: bold } /* Operator.Word */ +.w { color: #bbbbbb } /* Text.Whitespace */ +.mf { color: #40a070 } /* Literal.Number.Float */ +.mh { color: #40a070 } /* Literal.Number.Hex */ +.mi { color: #40a070 } /* Literal.Number.Integer */ +.mo { color: #40a070 } /* Literal.Number.Oct */ +.sb { color: #4070a0 } /* Literal.String.Backtick */ +.sc { color: #4070a0 } /* Literal.String.Char */ +.sd { color: #4070a0; font-style: italic } /* Literal.String.Doc */ +.s2 { color: #4070a0 } /* Literal.String.Double */ +.se { color: #4070a0; font-weight: bold } /* Literal.String.Escape */ +.sh { color: #4070a0 } /* Literal.String.Heredoc */ +.si { color: #70a0d0; font-style: italic } /* Literal.String.Interpol */ +.sx { color: #c65d09 } /* Literal.String.Other */ +.sr { color: #235388 } /* Literal.String.Regex */ +.s1 { color: #4070a0 } /* Literal.String.Single */ +.ss { color: #517918 } /* Literal.String.Symbol */ +.bp { color: #007020 } /* Name.Builtin.Pseudo */ +.vc { color: #bb60d5 } /* Name.Variable.Class */ +.vg { color: #bb60d5 } /* Name.Variable.Global */ +.vi { color: #bb60d5 } /* Name.Variable.Instance */ +.il { color: #40a070 } /* Literal.Number.Integer.Long */ diff --git a/css/swc-bootstrap.css b/css/swc-bootstrap.css new file mode 100644 index 0000000..5f52b79 --- /dev/null +++ b/css/swc-bootstrap.css @@ -0,0 +1,71 @@ +/* Customizations to Bootstrap's default styles */ + +blockquote p { + font-size: inherit; + font-weight: inherit; + line-height: inherit; +} + +/* readability: darken the alert colour for contrast with background */ +.alert { + color: rgb(0,0,0); +} + +/* Container for page contents. */ +.container { + background-color: white; +} + +.hero-unit { + padding: 20px; +} + +.navbar .container { + background-color: inherit; +} + +.navbar-inner { + min-height: 40px; + padding-right: 20px; + padding-left: 20px; + background-color: #F4F4F4; + background-image: none; + border: 1px solid #d4d4d4; + -webkit-border-radius: 0; + -moz-border-radius: 0; + border-radius: 0; +} + +code { + color: #333333; +} + +.navbar-inverse .navbar-inner { + background-color: #20267D; + background-image: none; + border-color: #20267D; +} + +.navbar-inverse .nav .active > a, +.navbar-inverse .nav .active > a:hover, +.navbar-inverse .nav .active > a:focus { + color: #ffffff; + background-color: #20267D; +} + +.navbar-inverse .nav li.dropdown.open > .dropdown-toggle, +.navbar-inverse .nav li.dropdown.active > .dropdown-toggle, +.navbar-inverse .nav li.dropdown.open.active > .dropdown-toggle { + color: #ffffff; + background-color: #20267D; +} + +.navbar-inverse .nav li.dropdown.active > .dropdown-toggle .caret { + border-top-color: #999999; + border-bottom-color: #999999; +} + +.navbar-inverse .nav li.dropdown.open > .dropdown-toggle .caret { + border-top-color: #ffffff; + border-bottom-color: #ffffff; +} diff --git a/css/swc.css b/css/swc.css new file mode 100644 index 0000000..b83d3b8 --- /dev/null +++ b/css/swc.css @@ -0,0 +1,299 @@ +/* Headings */ +h1, h2, h3, h4, h5, h6 { + color: rgb(03,03,03); +} + +h1, h2 { + margin-top: 40px; + margin-bottom: 10px; +} + +h1 a, h2 a, h3 a, h4 a, h5 a, h6 a { + color: inherit; +} + +/* Chapter titles. */ +div.chapter h2 { + text-align: center; + font-style: italic; +} + +/* Objectives and key points */ +.objectives, .keypoints { + background-color: azure; +} + +/* Things to fix. */ +.fixme { + text-decoration: underline; + color: darkred; + background-color: lightgray; +} + +/* Putting shadows around things. */ +.shadow { + -moz-box-shadow: 0 0 30px 5px #999; + -webkit-box-shadow: 0 0 30px 5px #999; + box-shadow: 0 0 30px 5px #999; +} + +/* Things to understand (lead-in to sections in book). */ +.understand { + background-color: lightyellow; +} + +/* Block quotations. */ +blockquote { + margin: 1em; + padding: 1em 1em .5em 1em; + width: 90%; +} + +/* Citation for testimonial quote. */ +blockquote.testimonial cite { + font-style: italic; +} + +/* Main body of pages. */ +body { + background: #BEC3C6; + margin: 20px 0; + font-family: "Open Sans", Helvetica, Arial, sans-serif; + color: rgb(03, 03, 03); +} + +/* Styling for editorial stylesheet */ +body.stylesheet { + background: #ffffff; + width: 60em; + margin: 20 auto; +} + +/* Top banner of every page. */ +div.banner { + background-color: #FFFFFF; + width: 100%; + height: 120px; + margin: 0px; + padding: 0; + border-bottom: 1px solid #A6A6A6; +} + +/* Padding around image in top banner. */ +div.banner a img { + padding: 20px 25px; +} + +/* Explanatory call-out boxes. */ +div.box { + background-color: mistyrose; + display: block; + margin-left: auto; + margin-right: auto; + padding-top: 1px; + padding-bottom: 1px; + padding-left: 10px; + padding-right: 10px; + outline-color: gray; + outline-width: 1px; + outline-style: solid; +} +@media (max-width: 700px) { + div.box { + width: 80%; + } +} +@media (min-width: 700px) { + div.box { + width: 54em; + max-width: 80%; + } +} + +/* Level 2 headings inside pages. */ +div.content div h3 { + border-bottom: 1px solid #CCCCCC; + display: block; + font-family: Verdana,"BitStream vera Sans"; + margin-top: 10px; + padding: 0 5px 3px; +} + +/* PDF and slide files referenced from lectures. */ +div.files { + padding: 10px; +} + +/* Footer of every page. */ +div.footer { + clear: both; + background: url("/img/main_shadow.png") repeat-x scroll center top #FFFFFF; + padding: 4px 10px 7px 10px; + border-top: 1px solid #A6A6A6; + text-align: right; +} + +.swc-blue-bg { + background-color: #20267D; +} + +/* Main menu at the top of every page. */ +div.mainmenu { + clear: both; + background-color: #F4F4F4; + margin: 0px; + padding: 3px 0px 3px 25px; + border-bottom: 1px solid #A6A6A6; + height:30px +} + +#menubar { + float:left; + margin-top:4px; +} + +#searchbar { + float:right; + margin-right:20px; +} + +/* Narration for audio-only lectures. */ +div.narration { + text-align: center; + font-size: 2em; +} + +/* Table of contents. */ +div.toc { + /* No special styling yet. */ +} + +.transcript { + display: table; +} + +.transcript .media img { + border: 1px solid grey; +} + + +/* Title styling */ +h1.title { + margin:40px 0px; + border-bottom:1px solid #515151; +} + +/* YouTube video embed. */ +div.youtube { + text-align: center; + padding: 10px; +} + +/* Glossary description lists. */ +dl.gloss { + /* Empty for now. */ +} + +/* FIXME: shouldn't be using iframe's directly (EventBrite and YouTube should be via macro expansion). */ +iframe.youtube_player { + border : 0; + text-align : center; + width : 640px; + height : 500px; +} + +/* Amy Brown's logo in book/stylesheet.html. */ +img.logoARB { + float: right; +} + +/* Person's name in team.html. */ +span.person { + font-weight: bold; + font-style: italic; +} + +/* Bibliography book covers. */ +img.book-cover { + width: 80px; +} + +/* Blog calendar table in blog/index.html. */ +table.blogcalendar th { + text-align : right; + font-weight : bold; +} + +/* See above. */ +table.blogcalendar th.left { + text-align : left; +} + +/* See above. */ +table.blogcalendar tr td { + text-align : right; +} + +/* Blog index tables in blog/index.html. */ +table.blogindex td.date { + text-align: left ; + width:10em; +} + +/* Tables used for displaying choices in challenges. */ +table.choices tr td { + vertical-align : top; +} + +/* Database tables do _not_ have double borders */ +table.outlined { + border-collapse: collapse; +} + +/* Container for content in the bootcamp index page */ +div.bootcamps { + text-align: center; +} + +/* Link items (to bootcamp pages) in the bootcamps tables */ +table.bootcamps td.link { + width: 50%; + text-align: left; +} + +/* Spacer items (i.e. ellipsis) on the bootcamps tables */ +table.bootcamps td.spacer { + max-width: 100%; + text-align: center; +} + +/* Date columns on the bootcamps tables */ +table.bootcamps td.date { + width: 50%; + text-align: right; +} + +/* Badge modal dialog */ +#assertion-modal { + width:700px; + margin-left:-350px; +} +#assertion-modal iframe { + background-color: transparent; + border: 0px none transparent; + padding: 0px; + width: 100%; + height: 20em; +} + +#assertion-model img.badge { + position: absolute; + right: 15px; + bottom: 35px; + opacity: 0.5; +} + +/* list with checkbox as bullet */ +ul.checklist { + list-style-image: url('/img/checkbox.png'); +} diff --git a/images/bash-profile.png b/images/bash-profile.png new file mode 100644 index 0000000..941a30b Binary files /dev/null and b/images/bash-profile.png differ diff --git a/images/cyberduck.png b/images/cyberduck.png new file mode 100644 index 0000000..0ff23fd Binary files /dev/null and b/images/cyberduck.png differ diff --git a/images/globus.png b/images/globus.png new file mode 100644 index 0000000..2328d7f Binary files /dev/null and b/images/globus.png differ diff --git a/images/home.png b/images/home.png new file mode 100644 index 0000000..58552e5 Binary files /dev/null and b/images/home.png differ diff --git a/images/login.png b/images/login.png new file mode 100644 index 0000000..7df772d Binary files /dev/null and b/images/login.png differ diff --git a/images/qdel.png b/images/qdel.png new file mode 100644 index 0000000..f70c457 Binary files /dev/null and b/images/qdel.png differ diff --git a/images/qstat.png b/images/qstat.png new file mode 100644 index 0000000..8eefe1c Binary files /dev/null and b/images/qstat.png differ diff --git a/images/showq.png b/images/showq.png new file mode 100644 index 0000000..6492a9b Binary files /dev/null and b/images/showq.png differ diff --git a/images/sph-module.png b/images/sph-module.png new file mode 100644 index 0000000..fc544be Binary files /dev/null and b/images/sph-module.png differ diff --git a/index.md b/index.md new file mode 100644 index 0000000..4ce09ce --- /dev/null +++ b/index.md @@ -0,0 +1,33 @@ +--- +layout: lesson +root: . +lastupdated: May 31, 2016 +--- + + +Using FLUX for microbiome analysis +======= + + + + +## Lessons: + + +1. [Lesson 01 Getting started](lessons/01-getting-started.html) +2. [Lesson 02 Logging in](lessons/02-login.html) +3. [Lesson 03 Running flux jobs](lessons/03-jobs.html) +4. [Lesson 04 Running mothur on flux](lessons/04-running-mothur.html) +5. [Lesson 05 Executing many jobs with loops and arrays](lessons/05-job-arrays.html) + +## What is FLUX? +FLUX is University of Michigan's High Performance Computing cluster. It is maintained by [ARC-TS](http://arc-ts.umich.edu/systems-and-services/flux/). ARC-TS runs frequent [workshops](http://cscar.research.umich.edu/hpc-workshops/) on how to use FLUX. +This tutorial serves as a supplement to their HPC101 course with specific examples of how to run [mothur](http://www.mothur.org/) and some additional tricks. + +## Getting flux help: +The flux support at UM is terrific! If you're having an issue or you want to have some software installed on flux, send them an email at **flux-support@umich.edu** + + +## Contributors: +This repo is maintained by [**Michelle Berry**](https://github.com/michberr) + diff --git a/lessons/01-getting-started.html b/lessons/01-getting-started.html new file mode 100644 index 0000000..d8e9efc --- /dev/null +++ b/lessons/01-getting-started.html @@ -0,0 +1,188 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +
+
+

Objectives

+ +
+
+
+

Getting a flux account

+

Arc-ts describes how to set up a flux account here. Follow steps 1-4 before moving onto any other lesson.

+

Note: I recommend the software mtoken. Then you don’t have to keep track of it!

+
+

There are some other software programs that will make your life much easier while working with flux.

+
+

Cyberduck

+

Cyberduck is a GUI program that allows you to connect to a remote server and transfer files between a remote server and local machine. You can essentially drag and drop files from your flux account onto your computer.

+

You can download Cyberduck here.

+
+

Configuration

+

You will need to configure Cyberduck to access your flux account

+
    +

  1. Click on the + button at the bottom left to add a new server connection to your bookmarks

    2. +

  2. Select SFTP (SSH File Transfer Protocol) from the drop down menu at the top

    3. +
  3. Enter the location of the server you are trying to connect to
    4. +
+
    +
  • The Server address is flux-xfer.arc-ts.umich.edu
    • +
  • The path depends on where you want to connect. I have bookmarks for my home directory and scratch drive, but I almost exclusively use the scratch drive which would be: /scratch/lsa_fluxm/michberr.
    • +
+

cyberduck

+
+
+
+
+

Globus

+

Globus is similar to cyberduck in that it provides a GUI for transferring files between machines. There are a few differences, however.

+
    +

  1. Globus is much faster than cyberduck, so it is ideal to use for very large files.

    2. +

  2. Globus can transfer files between two remote servers. For example, you can use Globus to transfer files between Greg’s geomicro servers and your flux account. You can also use Globus to transfer files between different locations on your flux account such as between the nfs and scratch drives. The only requirement for tranferring files with Globus is that an endpoint must be set up. These have already been configured on flux and the geomicro servers. It is not too hard to set up a personal endpoint on your own computer.

    3. +

  3. Globus is accessed through a web browser. If you are transferring files between two remote servers, once you have submitted the transfer request, you can close your computer :)

    4. +
+

You can download and register for a Globus personal endpoint here.

+

Once you have Globus downloaded, you can access a web page to transfer files between remote servers and your personal machine using aliases. For example, flux is accessible through the alias “umich#flux”. You can set an alias for your own computer. In the example below, it is simply called “laptop”.

+

globus

+
+
+ + + + +
+ + + + + + + + diff --git a/lessons/01-getting-started.md b/lessons/01-getting-started.md new file mode 100644 index 0000000..d9b56bb --- /dev/null +++ b/lessons/01-getting-started.md @@ -0,0 +1,80 @@ +------------ + +> ## Objectives +> +> * Explain the steps involved in obtaining a flux account +> * Provide links to supplementary software that makes interacting with flux easier + + +------------ + +# Getting a flux account + +Arc-ts describes how to set up a flux account [here](http://arc-ts.umich.edu/flux-user-guide/). Follow steps 1-4 before moving onto any other lesson. + + +**Note:** I recommend the software mtoken. Then you don't have to keep track of it! + + +------------ + +There are some other software programs that will make your life much easier +while working with flux. + +## Cyberduck + +Cyberduck is a GUI program that allows you to connect to a remote server and +transfer files between a remote server and local machine. You can essentially +drag and drop files from your flux account onto your computer. + +**You can download Cyberduck [here](https://cyberduck.io/?l=en).** + +### Configuration + +You will need to configure Cyberduck to access your flux account + +1) Click on the + button at the bottom left to add a new server connection to your bookmarks + +2) Select SFTP (SSH File Transfer Protocol) from the drop down menu at the top + +3) Enter the location of the server you are trying to connect to + * The Server address is flux-xfer.arc-ts.umich.edu + * The path depends on where you want to connect. I have bookmarks for my home + directory and scratch drive, but I almost exclusively use the scratch drive which would be: /scratch/lsa_fluxm/michberr. + + ![cyberduck](../images/cyberduck.png) + +------------ +## Globus + +Globus is similar to cyberduck in that it provides a GUI for transferring +files between machines. There are a few differences, however. + +1) Globus is *much* faster than cyberduck, so it +is ideal to use for very large files. + +2) Globus can transfer files between two remote servers. For example, you can use +Globus to transfer files between Greg's geomicro servers and your flux account. +You can also use Globus to transfer files between different locations on your +flux account such as between the nfs and scratch drives. The only requirement for +tranferring files with Globus is that an endpoint must be set up. These have already +been configured on flux and the geomicro servers. It is not too hard to set up a +personal endpoint on your own computer. + +3) Globus is accessed through a web browser. If you are transferring files between +two remote servers, once you have submitted the transfer request, you can close your computer :) + +**You can download and register for a Globus personal endpoint [here](https://www.globus.org/globus-connect-personal).** + +Once you have Globus downloaded, you can access a web page to transfer files between +remote servers and your personal machine using aliases. For example, flux is accessible +through the alias "umich#flux". You can set an alias for your own computer. +In the example below, it is simply called "laptop". + +![globus](../images/globus.png) + + + + + + diff --git a/lessons/02-login.html b/lessons/02-login.html new file mode 100644 index 0000000..d89a44c --- /dev/null +++ b/lessons/02-login.html @@ -0,0 +1,218 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +
+
+

Objectives

+ +
+
+
+

Logging into FLUX

+

You will need to log into flux using a command-line terminal. If you have a mac machine, open your terminal program. On a PC you will need to download an external emulator program like cygwin.

+

If you are logging into FLUX from off campus, you will need to set up a VPN. Information on this is available here.

+

To log into FLUX, use the following command:

+
ssh -l your-uniq-name flux-login.arc-ts.umich.edu
+

FLUX will then ask for your password. This is your umich password. Type your password and press enter. Your password will not appear on the screen but it is there.

+

Next, flux will ask for your Duo authentication code. Type it in and press enter.

+
+ + +
+
+
+ +
+

Easier login

+

If you are logging into flux frequently, it can be cumbersome to type this in all the time. Therefore, i recommend you create some aliases in your bash profile.

+

Navigate to your home directory:

+
# cd with no argument will take you to your home
+cd
+
+# Print working directory to make sure you're in the right place
+pwd
+

See if you have a file called .bash_profile, and if not, make a file:

+
# List all files in your current directory (including files starting with '.')
+ls -a
+
+# Create a .bash_profile file if it doesn't exist
+touch .bash_profile
+
+# Open your file for editing with nano
+nano .bash_profile
+

Add these lines to your file (make sure to change to your uniq name!) and save.

+
# login to flux
+alias flux='ssh -l your-uniq-name flux-login.arc-ts.umich.edu'
+
+
+ + +
+

Now, when you want to login to flux, you only have to flux to initiate the login process!

+
+
+ + + + +
+ + + + + + + + diff --git a/lessons/02-login.md b/lessons/02-login.md new file mode 100644 index 0000000..0cdaada --- /dev/null +++ b/lessons/02-login.md @@ -0,0 +1,119 @@ +------------ + +> ## Objectives +> +> * Demonstrate how to log into FLUX +> * Describe how to navigate in FLUX +> * Provide some useful aliases to make login easier + + + +------------ + + +# Logging into FLUX +You will need to log into flux using a command-line terminal. If you have a mac machine, open your terminal program. On a PC you will need to download an external emulator program like [cygwin](https://www.cygwin.com/). + +If you are logging into FLUX from off campus, you will need to set up a VPN. +Information on this is available [here](http://arc-ts.umich.edu/flux-user-guide/). + + +To log into FLUX, use the following command: +```{r} +ssh -l your-uniq-name flux-login.arc-ts.umich.edu +``` +FLUX will then ask for your password. This is your umich password. Type your password and press enter. Your password will not appear on the screen but it is there. + +Next, flux will ask for your Duo authentication code. Type it in and press enter. + + +![](../images/login.png) + + +------------ + +# Navigation + +Once you have logged in to FLUX, you should be in your home directory. We +can use `pwd` to check our location: + +```{r} +pwd +``` + +![](../images/home.png) + + +You are currently on a "login node". This basically means we are on a dinky computer +which can't do a lot of processing, but it can allow us to do some simple tasks like +viewing files, editing files, or moving files. + +I don't keep much in my home directory. The only things I store there are a copy of +my scripts and a .bash_profile with some helpful aliases. When I want to run programs, I copy my data +and scripts to the scratch drive which is the fastest drive to run programs from. You can +access the scratch drive both from the LSA account or if your lab has its own allcoation: + +```{r} +# Navigate to LSA's scratch drive +cd /scratch/lsa_fluxm/your-uniq-name + +# Navigate to the Denef lab scratch drive +cd /scratch/vdenef_fluxm/your-uniq-name +``` + +However, you might have seen in the login message that both the home and scratch +drives are NOT for longterm data storage. In fact, FLUX will delete your files if +you leave them on the scratch drive for longer than 3 months without touching them. +They will send you a couple of warning emails beforehand, though. + +Therefore, it's best +to have another server (the Denef lab has an nfs drive) that is designed for storage. +After you run your analysis, you should get into the habit of transferring all of +your results to this alternative location and removing it from the scratch drive. + + +# Easier login +If you are logging into flux frequently, it can be cumbersome to type this in all the time. Therefore, i recommend you create some aliases in your bash profile. + + +Navigate to your home directory: + +```{r} +# cd with no argument will take you to your home +cd + +# Print working directory to make sure you're in the right place +pwd +``` + +See if you have a file called `.bash_profile`, and if not, make a file: + +```{r} +# List all files in your current directory (including files starting with '.') +ls -a + +# Create a .bash_profile file if it doesn't exist +touch .bash_profile + +# Open your file for editing with nano +nano .bash_profile +``` + +Add these lines to your file (make sure to change to your uniq name!) and save. + +```{r} +# login to flux +alias flux='ssh -l your-uniq-name flux-login.arc-ts.umich.edu' + +``` + +![](../images/bash-profile.png) + + +Now, when you want to login to flux, you only have to **`flux`** to initiate the login process! + + +------------ + + + diff --git a/lessons/03-jobs.html b/lessons/03-jobs.html new file mode 100644 index 0000000..5f751de --- /dev/null +++ b/lessons/03-jobs.html @@ -0,0 +1,285 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +
+
+

Objectives

+ +
+
+
+

Jobs

+

To execute programs on FLUX, you will submit them to a job scheduling software called PBS, which stands for Portable Batch System. The role of PBS is to allocate computational resources (e.g., nodes, processors, and time) among the scheduled tasks.

+

This means that every time you want to run a program on FLUX, you will need a PBS script, ending in .pbs, that describes what resources are required for the program.

+
+
+

PBS scripts

+
+

Below is an example of a PBS script, blast-analysis.pbs, used to run a BLAST program:

+

To help distinguish code chunks that pertain to a pbs script from code chunks that should be typed in the terminal, chunks from scripts will have white backgrounds and chunks with terminal commands will have grey backgrounds.

+
####  PBS preamble
+#PBS -N blast
+#PBS -M michberr@umich.edu
+
+#PBS -l nodes=1:ppn=4, mem=100gb, walltime=10:00:00
+#PBS -V
+
+#PBS -A vdenef_fluxm
+#PBS -l qos=flux
+#PBS -q fluxm
+
+#PBS -m bea
+#PBS -j oe
+
+####  End PBS preamble
+
+#  Show list of CPUs you ran on, if you're running under PBS
+if [ -n "$PBS_NODEFILE" ]; then cat $PBS_NODEFILE; fi
+
+#  Change to the directory you submitted from
+if [ -n "$PBS_O_WORKDIR" ]; then cd $PBS_O_WORKDIR; fi
+pwd
+
+## Job commands
+# must load module med/ncbi-blast
+
+bash ./blast-analysis.sh
+
+
+

The first thing you might notice about this script is that the first several lines start with #PBS. Normally, a # indicates a comment, i.e. a command that will not be read by a computer program. However, in this case, a line starting with #PBS indicates that it is a line that should be read by the PBS software. Lines that begin with a # without PBS directly following it are interpreted as comments by bash.

+
+
+

Now, we will walk through each line of the script one at a time.

+

This first line takes an argument -N, which assigns a name to the job. Pick something descriptive but short - only the first 8 characters will be used. In this example my job is simply named “blast”.

+
#PBS -N blast
+

This line indicates which email you want notifications sent to. By default notifications will be sent to your umich address.

+
#PBS -M michberr@umich.edu
+

This next line indicates how many nodes, processors per nodes, and walltime to allocate. The Denef lab has two types of flux nodes:

+

     1) Our regular flux nodes (flux) have 20 processors, 4gb per processor.

+

     2) Our high memory nodes (fluxm) have 40 processors, 25gb per processor.

+

If you are not using the Denef lab account, check on what sort of resources you have available. Info on the LSA public account is available here.

+

The line below indicates we want to allocate 1 node with 4 processors, 100gb of memory, and 10 hours for the analysis. You can tell from the memory requirements (100gb/ 4 processors) that this job will be run on a fluxm node.

+
#PBS -l nodes=1:ppn=4,mem=100gb,walltime=10:00:00
+

This next line is like magic. It transfers everything in your current environment into the environment of the node your job will be run on. This will become important later when we load modules

+
#PBS -V
+

These two lines describe how your job is paid for and which set of resources to run against. -A indicates the account. In the example below, the job is going to be run on the Denef lab’s fluxm account. If I wanted to run it on the flux (low memory) account, I would use -A vdenef_flux. The -q line indicates which queue your job should go into. This should always match the option for -A (i.e. flux or fluxm).

+
#PBS -A vdenef_fluxm
+#PBS -q fluxm
+

The line should never change.

+
#PBS -l qos=flux
+

This line describes when you want to get email notifications about your job. If you input all options, bea, you will get messages when the job begins, when an error occurs, and after the job has completed. Depending on the type of job, you might find all of the messages in your email annoying. I usually just leave an e or ea on this line.

+
#PBS -m bea
+

This line joins the output and error messages into one document rather than outputting a separate file for each. This isn’t necessary, but it helps to declutter your job output files.

+
#PBS -j oe
+

Whew, we’ve gotten to the end of our PBS commands! These next two lines are useful output from your job to show how many CPUs the job ran on and which directory it was running from. A PBS job has certain default variables stored like $PBS_O_WORKDIR which is the output working directory.

+
#  Show list of CPUs you ran on, if you're running under PBS
+if [ -n "$PBS_NODEFILE" ]; then cat $PBS_NODEFILE; fi
+
+#  Change to the directory you submitted from
+if [ -n "$PBS_O_WORKDIR" ]; then cd $PBS_O_WORKDIR; fi
+pwd
+

Finally, this last section actually executes our program. In this case we are executing a shell script called blast-analysis.sh that presumably calls one of the BLAST commands. We also wrote a comment to ourselves reminding us which modules need to be loaded before running the job.

+
## Job commands
+# must load module med/ncbi-blast
+
+bash ./blast-analysis.sh
+
+
+
+
+

Loading modules

+

If your job requires any external software such as BLAST, mothur, tophat, etc, you will need to load these modules before executing your job. Modules are available in different locations. I usually check for bioinformatics modules in med, sph, and lsa.

+

Typing the following command into the terminal will allow you to view all of the modules available from the school of public health:

+
module load sph
+module av
+

sph

+

You will notice that there are often multiple versions of a software available. If you do not specify which version to load, the default version will be selected.

+

To load the BLAST module (default is 2.2.29) :

+
module load med
+module load ncbi-blast 
+
+

IMPORTANT: You can technically load modules from within your pbs script, but this is not recommended. Instead, you should load a module from the command line before you submit your job. This is where the #PBS -V option comes in handy! Whatever modules you load in your local environment will be present in the processing environment.

+
+
+
+

Starting a job

+

You can start your job with this simple line:

+
qsub your-pbs-file.pbs
+

Always make sure that you have loaded your modules before hand!

+
+
+
+

Viewing a job

+

Once you have submitted your job, you can check on it in a few ways.

+

To view the status of your job, use the qstat command.

+
qstat -u your-uniqname
+
+

Each job is assigned a unique job id, which is viewable on the left. On the right, there is a column S for status where you can see whether your job is in the queue (Q), running (R), or completed (C).

+

In this example, I have just submitted a job, so it is waiting in the queue:

+

qstat

+
+

To peek at the output of a job as it is running, you can use the qpeek command with the job id

+
qpeek job-id
+

To view all the jobs running on an account, your can use the showq command. This is often useful to do before running a job to determine how long your job will be in the queue before it can run.

+
showq -w acct=your-account
+
+
+
+

showq

+
+
+

Cancelling a job

+

You can cancel a job in the queue or a running job using qdel with the job id.

+
qdel job-id
+

qdel

+

Notice that the right column now displays a “C” for complete. The job didn’t actually run because we cancelled it before it started. Therefore a “C” just means the job is no longer running or waiting to run. It tells you nothing about the success of the job.

+
+
+
+
+

Considerations

+

When you start out it’s hard to know how many resources to allocate to a job. In general you want to overestimate your resources, because if you run out of memory or time, your job will fail and you will have to start over. This sucks if you have been running something for 3 days and you only needed 3 more hours for completion. It’s a good idea to test your code on a subset of your data, both to make sure everything runs correctly, and to estimate the total amount of resources your will need.

+

In the next section, we will walk through an example of running mothur on flux, which will give some guidance for the allocation this software requires.

+
+
+ + + + +
+ + + + + + + + diff --git a/lessons/03-jobs.md b/lessons/03-jobs.md new file mode 100644 index 0000000..179b04b --- /dev/null +++ b/lessons/03-jobs.md @@ -0,0 +1,261 @@ +------------ + +> ## Objectives +> +> * Introduce PBS and describe the arguments of a PBS script +> * Explain how to execute, view, and cancel jobs on FLUX +> * Discuss memory and walltime considerations + + +------------ + +# Jobs + +To execute programs on FLUX, you will submit them to a job scheduling software called **PBS**, which stands for **Portable Batch System**. The role of **PBS** is to allocate computational resources (e.g., nodes, processors, and time) among the scheduled tasks. + +This means that every time you want to run a program on FLUX, you will need a **PBS** script, ending in .pbs, that describes what resources are required for the program. + +------------ + +## PBS scripts + +#### Below is an example of a PBS script, blast-analysis.pbs, used to run a BLAST program: +To help distinguish code chunks that pertain to a pbs script from code chunks +that should be typed in the terminal, +chunks from scripts will have white backgrounds and chunks with terminal commands +will have grey backgrounds. + +```{} +#### PBS preamble +#PBS -N blast +#PBS -M michberr@umich.edu + +#PBS -l nodes=1:ppn=4, mem=100gb, walltime=10:00:00 +#PBS -V + +#PBS -A vdenef_fluxm +#PBS -l qos=flux +#PBS -q fluxm + +#PBS -m bea +#PBS -j oe + +#### End PBS preamble + +# Show list of CPUs you ran on, if you're running under PBS +if [ -n "$PBS_NODEFILE" ]; then cat $PBS_NODEFILE; fi + +# Change to the directory you submitted from +if [ -n "$PBS_O_WORKDIR" ]; then cd $PBS_O_WORKDIR; fi +pwd + +## Job commands +# must load module med/ncbi-blast + +bash ./blast-analysis.sh + + +``` + +The first thing you might notice about this script is that the +first several lines start with **`#PBS`**. Normally, a **`#`** indicates a comment, i.e. a command that will *not* be read by a computer program. However, in this case, a line starting with **`#PBS`** indicates that it is a line that should be read by the PBS software. +Lines that begin with a `#` without `PBS` directly following it are interpreted as comments by bash. + +#### Now, we will walk through each line of the script one at a time. + +This first line takes an argument `-N`, which assigns a name to the job. Pick something +descriptive but short - only the first 8 characters will be used. In this example +my job is simply named "blast". + +```{} +#PBS -N blast +``` + +This line indicates which email you want notifications sent to. By default notifications will be sent to your umich address. +```{} +#PBS -M michberr@umich.edu +``` + +This next line indicates how many nodes, processors per nodes, +and walltime to allocate. The Denef lab has two types of flux nodes: + +     1) Our regular flux nodes (flux) have 20 processors, 4gb per processor. + +     2) Our high memory nodes (fluxm) have 40 processors, 25gb per processor. + +If you are not using the Denef lab account, check on what sort of resources +you have available. Info on the LSA public account is available [here](http://arc-ts.umich.edu/flux-configuration/). + +The line below indicates we want to allocate 1 node with 4 processors, 100gb of memory, and 10 hours for the analysis. +You can tell from the memory requirements (100gb/ 4 processors) that this job will be run on a fluxm node. + +```{} +#PBS -l nodes=1:ppn=4,mem=100gb,walltime=10:00:00 +``` + +This next line is like magic. It transfers everything in your +current environment into the environment of the node your job +will be run on. This will become important later when we load modules + +```{} +#PBS -V +``` + +These two lines describe how your job is paid for and which set of resources to run against. `-A` indicates the account. In the example below, the job is going to be run on the Denef lab's fluxm account. If I wanted to run it on the flux (low memory) account, I would use `-A vdenef_flux`. The `-q` line indicates which queue your job should go into. This should always match the option for `-A` (i.e. flux or fluxm). + +```{} +#PBS -A vdenef_fluxm +#PBS -q fluxm +``` + +The line should never change. +```{} +#PBS -l qos=flux +``` + +This line describes when you want to get email notifications about your job. If you input all options, bea, you will get messages when the job **b**egins, when an **e**rror occurs, and **a**fter the job has completed. Depending on the type of job, you might find all of the messages in your email annoying. I usually just leave an `e` or `ea` on this line. + +```{} +#PBS -m bea +``` + +This line joins the output and error messages into one document rather than +outputting a separate file for each. This isn't necessary, but it helps to declutter your job output files. +```{} +#PBS -j oe +``` + +Whew, we've gotten to the end of our `PBS` commands! These next two lines +are useful output from your job to show how many CPUs the job ran on and which directory it was running from. A PBS job has certain default variables stored like `$PBS_O_WORKDIR` which is the output working directory. + +```{} +# Show list of CPUs you ran on, if you're running under PBS +if [ -n "$PBS_NODEFILE" ]; then cat $PBS_NODEFILE; fi + +# Change to the directory you submitted from +if [ -n "$PBS_O_WORKDIR" ]; then cd $PBS_O_WORKDIR; fi +pwd +``` +Finally, this last section actually executes our program. In this case we are executing a shell script called blast-analysis.sh that presumably calls one of the BLAST commands. We also wrote a comment to ourselves reminding us +which **modules** need to be loaded before running the job. + +```{} +## Job commands +# must load module med/ncbi-blast + +bash ./blast-analysis.sh + +``` +## Loading modules + +If your job requires any external software such as BLAST, mothur, tophat, etc, +you will need to load these modules before executing your job. Modules are available +in different locations. I usually check for bioinformatics modules in med, sph, and lsa. + +Typing the following command into the terminal will allow you to view all of the modules available from +the school of public health: +```{r} +module load sph +module av +``` + +![sph](../images/sph-module.png) + +You will notice that there are often multiple versions of a software available. +If you do not specify which version to load, the default version will be selected. + +To load the BLAST module (default is 2.2.29) : +```{r} +module load med +module load ncbi-blast + +``` + + +**IMPORTANT: ** +You can technically load modules from within your pbs script, but this is not +recommended. Instead, you should load a module from the command line before you +submit your job. This is where the `#PBS -V` option comes in handy! Whatever +modules you load in your local environment will be present in the processing environment. + +------------ + +## Starting a job + + +You can start your job with this simple line: +```{r} +qsub your-pbs-file.pbs +``` + +Always make sure that you have loaded your modules before hand! + +------------ + +## Viewing a job + +Once you have submitted your job, you can check on it in a few ways. + +To view the status of your job, use the `qstat` command. + + +```{r} +qstat -u your-uniqname + +``` + +Each job is assigned a unique job id, which is viewable on the left. +On the right, there is a column S for status where you can see whether your job is in the queue (Q), running (R), or completed (C). + +In this example, I have just submitted a job, so it is waiting in the queue: + + +![qstat](../images/qstat.png) + + +------------ + +To peek at the output of a job as it is running, you can use the `qpeek` command with the job id +```{r} +qpeek job-id +``` +To view all the jobs running on an account, your can use the `showq` command. +This is often useful to do before running a job to determine how long your job +will be in the queue before it can run. + +```{r} +showq -w acct=your-account + +``` +![showq](../images/showq.png) +------------ + +## Cancelling a job + +You can cancel a job in the queue or a running job using `qdel` with the job id. +```{r} +qdel job-id +``` + +![qdel](../images/qdel.png) + +Notice that the right column now displays a "C" for complete. The job didn't actually +run because we cancelled it before it started. Therefore a "C" just means the job +is no longer running or waiting to run. It tells you nothing about the success of the job. + + +------------ + +# Considerations + +When you start out it's hard to know how many resources to allocate to a job. In +general you want to overestimate your resources, because if you run out of memory +or time, your job will fail and you will have to start over. This sucks if you have +been running something for 3 days and you only needed 3 more hours for completion. +It's a good idea to test your code on a subset of your data, both to make sure everything +runs correctly, and to estimate the total amount of resources your will need. + +In the next section, we will walk through an example of running mothur on flux, +which will give some guidance for the allocation this software requires. + +------------ \ No newline at end of file diff --git a/lessons/04-running-mothur.html b/lessons/04-running-mothur.html new file mode 100644 index 0000000..a35ec60 --- /dev/null +++ b/lessons/04-running-mothur.html @@ -0,0 +1,223 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +
+
+

Objectives

+ +
+
+

In the following example we will run mothur, according to the SOP, on a set of bacterial samples that have had their 16S rRNA gene sequences on a MiSeq.

+
+

Setup

+

First, we need to get our sequences onto flux. Most likely, you had your samples sequenced at the UM Med School and they put your sequences on an MBox. Unless they have changed their setup, you will need to download these sequences to a local machine and then use Globus (recommended) or Cyberduck (fine for only a few samples) to transfer these files onto your FLUX account.

+

IMPORTANT: You should keep a safe version of these files in a long-term storage location like a flux nfs drive. Then use Globus to transfer a copy to the Scratch drive for processing.

+
+
+

Mothur batch script

+

Here is a link to an example mothur batch file, following the SOP. Please refer to the mothur wiki for an in depth explanation of the commands.

+

You can copy it to your current flux location with:

+
wget https://github.com/DenefLab/flux-tools/raw/gh-pages/scripts/mothur.batch
+
+

You will definitely need to edit the following lines of the file:

+

Change your input, output, and tempdefault locations. Tempdefault signifies a location that mothur will search for file that are not in the input directory. This is a good place to leave your databases for alignment/taxonomy.

+
set.dir(input=/scratch/lsa_fluxm/michberr/HABS)
+set.dir(output=/scratch/lsa_fluxm/michberr/HABS)
+set.dir(tempdefault=/scratch/lsa_fluxm/vdenef/Databases/ssu_rRNA/Mothur/)
+

Change the file argument to a file that contains all your sample names and links to the forward and reverse reads. See the example stability.file in the SOP. Set the processors argument to the number of processors you will request in your PBS script.

+
make.contigs(file=habs.files, processors=30)
+

Change the reference argument to the name of the file you want to align to

+
align.seqs(fasta=current, reference=silva.seed_v119.pcr.v4.unique.align)
+

Change the reference and taxonomy arguments to the files you are using for your analysis

+
classify.seqs(fasta=current, count=current, reference=silva.nr_v119.pcr.v4.align, taxonomy=silva.nr_v119.tax, cutoff=60)
+

Change the groups argument to the names of the mock groups included in your run. They should be separated by a ‘-’

+
remove.groups(count=current, fasta=current, taxonomy=current, groups=Mock1-Mock2)
+

You might want to edit several other lines of this file based on the needs of your analysis.

+
+
+

Mothur PBS script

+

Here is a link to an example PBS script to execute the mothur batch file. You can copy it to your FLUX location the same way as the batch file.

+
wget https://github.com/DenefLab/flux-tools/raw/gh-pages/scripts/mothur.pbs
+

You will definitely need to edit the -M line:

+
#PBS -M your-email
+
+

If you are not in the Denef lab, you will need to edit the -A line:

+
#PBS -A your-account
+

You might want to edit the -l line with a different memory or walltime allocation based on the size of your dataset. Usually, for ~350 samples of moderate diversity, it takes less than 24 hours on 30 processors.

+
+
+
+

Run the job

+

To begin running mothur we need to load the mothur module.

+
module load med
+module load mothur
+

Now it’s time to execute!

+
qsub mothur.pbs
+

We can check our job with:

+
qstat -u your-uniq-name
+
+

Most likely, your script will fail the first few times you try to run it. Usually the error is related to an incorrect path or filename or setting an impossible allocation in your PBS script. Read your output/error file (the file ending in .o and your jobid) to debug.

+
cat mothur-output-file
+
+
+

Special mothur considerations

+

Some mothur commands are designed to run very efficiently on a large number of processors. This is where running your job on FLUX will save you a LOT of time over a local machine. However, the OTU picking stage can only run on a single processor and this is usually the most time consuming part of the process. The more diversity you have, the longer this will take. This is good to keep in mind as you are weighing processor and time allocation. Adding 40 processors to your job will only help to a point. You should still add sufficient time for all of your OTUs to be calculated.

+

The most frustrating issue with mothur I have encountered is when you end up with many strange unclassified OTUs that you know should really be classified. This took us in the Denef lab almost a year to figure out. It turns out that a few extra files are generated when you run the classification step. You need to delete these files in between mothur runs, or move your reference and taxonomy files to a new location, or you will get strange and wrong results. These are the problemmatic files:

+ +
+ + + + +
+ + + + + + + + diff --git a/lessons/04-running-mothur.md b/lessons/04-running-mothur.md new file mode 100644 index 0000000..3b3ecec --- /dev/null +++ b/lessons/04-running-mothur.md @@ -0,0 +1,152 @@ +------------ + +> ## Objectives +> +> * Give an example of a full job execution workflow with mothur + + +------------ + +In the following example we will run [mothur](http://www.mothur.org/), +according to the [SOP](http://www.mothur.org/wiki/MiSeq_SOP), on a set of +bacterial samples that have had their 16S rRNA gene sequences on a MiSeq. + +# Setup +First, we need to get our sequences onto flux. Most likely, you had your +samples sequenced at the UM Med School and they put your sequences on an MBox. +Unless they have changed their setup, you will need to download these sequences +to a local machine and then use Globus (recommended) or Cyberduck (fine for only a few +samples) to transfer these files onto your FLUX account. + +**IMPORTANT**: You should keep a safe version of these files in a long-term storage +location like a flux nfs drive. Then use Globus to transfer a copy to the Scratch +drive for processing. + +# Mothur batch script + +[Here](https://github.com/DenefLab/flux-tools/blob/gh-pages/scripts/mothur.batch) is a link to an example mothur batch file, following the SOP. Please refer +to the mothur wiki for an in depth explanation of the commands. + +You can copy it to your current flux location with: + +```{r} +wget https://github.com/DenefLab/flux-tools/raw/gh-pages/scripts/mothur.batch + +``` +You will **definitely** need to edit the following lines of the file: + +Change your input, output, and tempdefault locations. +Tempdefault signifies a location that mothur will search for file that are not in the +input directory. This is a good place to leave your databases for alignment/taxonomy. +```{r} +set.dir(input=/scratch/lsa_fluxm/michberr/HABS) +set.dir(output=/scratch/lsa_fluxm/michberr/HABS) +set.dir(tempdefault=/scratch/lsa_fluxm/vdenef/Databases/ssu_rRNA/Mothur/) +``` + +Change the **file** argument to a file that contains all your sample names +and links to the forward and reverse reads. See the example stability.file in the SOP. +Set the **processors** argument to the number of processors you will request in your PBS script. +```{r} +make.contigs(file=habs.files, processors=30) +``` + +Change the **reference** argument to the name of the file you want to align to +```{r} +align.seqs(fasta=current, reference=silva.seed_v119.pcr.v4.unique.align) +``` + +Change the **reference** and **taxonomy** arguments to the files you are using for your analysis +```{r} +classify.seqs(fasta=current, count=current, reference=silva.nr_v119.pcr.v4.align, taxonomy=silva.nr_v119.tax, cutoff=60) +``` + +Change the **groups** argument to the names of the mock groups included in your run. +They should be separated by a '-' +```{r} +remove.groups(count=current, fasta=current, taxonomy=current, groups=Mock1-Mock2) +``` + +You **might** want to edit several other lines of this file based on the needs of +your analysis. + +------------ + +## Mothur PBS script + +[Here](https://github.com/DenefLab/flux-tools/gh-pages/scripts/mothur.pbs) is a link to an example PBS script to execute the mothur batch file. +You can copy it to your FLUX location the same way as the batch file. + +```{r} +wget https://github.com/DenefLab/flux-tools/raw/gh-pages/scripts/mothur.pbs +``` + +You will **definitely** need to edit the `-M` line: + +```{r} +#PBS -M your-email + +``` + +If you are not in the Denef lab, you will need to edit the `-A` line: +```{r} +#PBS -A your-account +``` + + +You **might** want to edit the `-l` line with a different memory or walltime +allocation based on the size of your dataset. Usually, for ~350 samples of moderate +diversity, it takes less than 24 hours on 30 processors. + +# Run the job + +To begin running mothur we need to load the mothur module. + +```{r} +module load med +module load mothur +``` + +Now it's time to execute! +```{r} +qsub mothur.pbs +``` + +We can check our job with: +```{r} +qstat -u your-uniq-name + +``` + +Most likely, your script will fail the first few times you try to run it. Usually +the error is related to an incorrect path or filename or setting an impossible allocation +in your PBS script. Read your output/error file (the file ending in .o and your jobid) to debug. + +```{r} +cat mothur-output-file +``` + +# Special mothur considerations + +Some mothur commands are designed to run very efficiently on a large number of processors. +This is where running your job on FLUX will save you a LOT of time over a local machine. +However, the OTU picking stage can only run on a single processor and this is usually the most time consuming part of +the process. The more diversity you have, the longer this will take. This is good to keep in mind +as you are weighing processor and time allocation. Adding 40 processors to your job will only +help to a point. You should still add sufficient time for all of your OTUs to be calculated. + +The most frustrating issue with mothur I have encountered is when you end up with +many strange unclassified OTUs that you know should really be classified. This took +us in the Denef lab almost a year to figure out. It turns out that a few extra files +are generated when you run the classification step. You need to delete these files +in between mothur runs, or move your reference and taxonomy files to a new location, +or you will get strange and wrong results. These are the problemmatic files: + + +* silva.nr_v119.silva.nr_v119.pcr.v4.8mer.numNonZero +* silva.nr_v119.silva.nr_v119.pcr.v4.8mer.prob +* silva.nr_v119.tree.sum +* silva.nr_v119.tree.train +* silva.nr_v119.pcr.v4.8mer + + diff --git a/lessons/05-job-arrays.html b/lessons/05-job-arrays.html new file mode 100644 index 0000000..99acac4 --- /dev/null +++ b/lessons/05-job-arrays.html @@ -0,0 +1,242 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +
+
+

Objectives

+ +
+
+

Often, you will want to run the same analysis on several samples. Rather than submit a job for each of these samples, you would like to submit one job and apply it to all of your samples. Depending on the requirements of the task, you can either write your script in a for loop or submit a PBS job array.

+
+

For loops

+

If your analysis is memory intensive, i.e. requires close to your full allocation, you might use a for loop. For example, if you are assembling several metagenomes, it would be best to assemble each one at a time, so that you can allocate all 40 processors from the Denef fluxm account to each sample.

+

Here is an example of a shell script that looks for directories that start with “Sample_” and then runs an analysis called my-analysis.sh on a fasta file in each of those directories.

+
for i in $(find -maxdepth 1 -type d -name "Sample_*"); do
+    myPath=${i}
+    echo -e "[`date`]\tStarting analysis on ${i}"
+    cd $myPath
+    bash ./my-analysis.sh my.fasta
+    cd - 
+    echo -e "[`date`]\tFinished with ${i}"
+done
+
+echo "[`date`]\tDone!"
+
+
+
+

Job arrays

+

For loops allow you to process many samples sequentially, but it would really speed up the process if you could submit the same job on many samples at the same time. This is exactly what a PBS job array does. Particularly, if your analysis is not that memory intensive, i.e. your allocation is large enough to run several jobs at once, you will definitely want to use a job array.

+

To submit a job array, you only need to add one line to your PBS script with the -t argument. The -t argument takes a set of indices for your job array. For example, if you wanted to run your script on 5 samples:

+
#PBS -t 1-5
+

PBS will then store a variable, $PBS_ARRAYID, which takes on values from the specified range (1-5 in this case). If we then started our job with qsub, 5 different instances of the job would be executed, each uniquely identified by a value from $PBS_ARRAYID.

+

We can use the $PBS_ARRAYID variable to assign samples to our job array. The way I like to do this is to create a file called job.conf that contains the name of each sample directory on a separate line. It might look like this:

+
Sample_1
+Sample_2
+Sample_3
+Sample_4
+Sample_5
+

Then, I can use the following line to assign a different sample directory for each element of my job array:

+
sample=$(sed "${PBS_ARRAYID}q;d" job.conf)
+

This line extracts the nth line of job.conf where n is our $PBS_ARRAYID number. This means that Sample_3 will run in the 3rd index of our job array.

+
+

Restricting arrays

+

If you want to submit a job array with a large number of samples, but you only want a few of them to run at a time, you can specify this with a %. For example the following line will run an array with 20 jobs, but will only run 5 of them at a time:

+
#PBS -t 1-20%5
+
+
+

Job array example:

+

Below is an example of a PBS script that will execute an analysis using the CRASS crispr-finding software

+
####  PBS preamble
+#PBS -N crass
+#PBS -m abe
+
+#PBS -l nodes=1:ppn=2,mem=50gb,walltime=200:00:00
+#PBS -V
+
+#PBS -A vdenef_fluxm
+#PBS -l qos=flux
+#PBS -q fluxm
+#PBS -t 1-7
+#PBS -j oe
+
+####  End PBS preamble
+
+#  Show list of CPUs you ran on, if you're running under PBS
+if [ -n "$PBS_NODEFILE" ]; then cat $PBS_NODEFILE; fi
+
+#  Change to the directory you submitted from
+if [ -n "$PBS_O_WORKDIR" ]; then cd $PBS_O_WORKDIR; fi
+pwd
+
+
+# required module: lsa/crass
+
+# Run CRASS script
+bash ./crass-analysis.sh ${PBS_ARRAYID}
+
+
+

Notice that here I pass $PBS_ARRAYID as an argument to my crass-analysis.sh script.

+

The crass-analysis.sh script looks like this:

+
arrayid="$1"
+sample=$(sed "${arrayid}q;d" job.conf)
+
+cd ${sample}
+echo -e "[`date`]\t Running CRASS on $sample"
+crass dt_int.fasta
+echo -e "[`date`]\t Finished with $sample"
+
+
+

In the first line $PBS_ARRAYID gets assigned to the variable $arrayid. In the second line $arrayid is used to assign the correct sample directory name to $sample.

+
+
+

Checking up on your array job

+

You can use all of the same commands (e.g., qstat, qdel, qpeek) with a job array as regular job. However, you will need to use bracket indexing to select a job from the array.

+

For example, for a job with id 19957691, I could peek at the output of the second sample with this command:

+
qpeek 19957691[2]
+
+

If I wanted to cancel all of the jobs in my job array I could do this:

+
qdel 19957691[]
+
+
+
+ + + + +
+ + + + + + + + diff --git a/lessons/05-job-arrays.md b/lessons/05-job-arrays.md new file mode 100644 index 0000000..bd69818 --- /dev/null +++ b/lessons/05-job-arrays.md @@ -0,0 +1,162 @@ +------------ + +> ## Objectives +> +> * Demonstrate how to run several jobs in succession using a for loop +> * Demonstrate how to run several jobs simultaneously using a PBS job array + +------------ + +Often, you will want to run the same analysis on several samples. Rather than +submit a job for each of these samples, you would like to submit one job and +apply it to all of your samples. Depending on the requirements of the task, you can either write your script in a for loop or +submit a PBS job array. + + +# For loops + +If your analysis is memory intensive, i.e. requires close to your full allocation, +you might use a for loop. For example, if you are assembling several +metagenomes, it would be best to assemble each one at a time, so that you can +allocate all 40 processors from the Denef fluxm account to each sample. + +Here is an example of a shell script that looks for directories that start with +"Sample_" and then runs an analysis called my-analysis.sh on a fasta file in each +of those directories. + +```{r} +for i in $(find -maxdepth 1 -type d -name "Sample_*"); do + myPath=${i} + echo -e "[`date`]\tStarting analysis on ${i}" + cd $myPath + bash ./my-analysis.sh my.fasta + cd - + echo -e "[`date`]\tFinished with ${i}" +done + +echo "[`date`]\tDone!" + +``` + +# Job arrays +For loops allow you to process many samples sequentially, but it would really speed +up the process if you could submit the same job on many samples at the same time. +This is exactly what a PBS job array does. +Particularly, if your analysis is not that memory intensive, i.e. your allocation is large +enough to run several jobs at once, you will definitely want to use a job array. + + +To submit a job array, you only need to add one line to your PBS script with the `-t` argument. The `-t` argument takes a set of indices for your job array. For example, if you wanted to run your script on 5 samples: + +```{} +#PBS -t 1-5 +``` + +PBS will then store a variable, `$PBS_ARRAYID`, which takes on values from the specified range (1-5 in this case). If we then started our job with `qsub`, 5 different instances +of the job would be executed, each uniquely identified by a value from `$PBS_ARRAYID`. + +We can use the `$PBS_ARRAYID` variable to assign samples to our job array. +The way I like to do this is to create a file called job.conf that contains +the name of each sample directory on a separate line. It might look like this: + +```{} +Sample_1 +Sample_2 +Sample_3 +Sample_4 +Sample_5 +``` + +Then, I can use the following line to assign a different +sample directory for each element of my job array: + +```{} +sample=$(sed "${PBS_ARRAYID}q;d" job.conf) +``` +This line extracts the nth line of job.conf where n is our `$PBS_ARRAYID` number. +This means that Sample_3 will run in the 3rd index of our job array. + + +#### Restricting arrays + +If you want to submit a job array with a large number of samples, but you +only want a few of them to run at a time, you can specify this with a `%`. +For example the following line will run an array with 20 jobs, but will only +run 5 of them at a time: + +```{} +#PBS -t 1-20%5 +``` + + +#### Job array example: + +Below is an example of a PBS script that will execute an analysis +using the CRASS crispr-finding software + +```{} +#### PBS preamble +#PBS -N crass +#PBS -m abe + +#PBS -l nodes=1:ppn=2,mem=50gb,walltime=200:00:00 +#PBS -V + +#PBS -A vdenef_fluxm +#PBS -l qos=flux +#PBS -q fluxm +#PBS -t 1-7 +#PBS -j oe + +#### End PBS preamble + +# Show list of CPUs you ran on, if you're running under PBS +if [ -n "$PBS_NODEFILE" ]; then cat $PBS_NODEFILE; fi + +# Change to the directory you submitted from +if [ -n "$PBS_O_WORKDIR" ]; then cd $PBS_O_WORKDIR; fi +pwd + + +# required module: lsa/crass + +# Run CRASS script +bash ./crass-analysis.sh ${PBS_ARRAYID} + + +``` +Notice that here I pass `$PBS_ARRAYID` as an argument to my crass-analysis.sh +script. + +The crass-analysis.sh script looks like this: + +```{} +arrayid="$1" +sample=$(sed "${arrayid}q;d" job.conf) + +cd ${sample} +echo -e "[`date`]\t Running CRASS on $sample" +crass dt_int.fasta +echo -e "[`date`]\t Finished with $sample" + + +``` +In the first line `$PBS_ARRAYID` gets assigned to the variable `$arrayid`. In the second line +`$arrayid` is used to assign the correct sample directory name to `$sample`. + +#### Checking up on your array job +You can use all of the same commands (e.g., `qstat`, `qdel`, `qpeek`) with a job array as regular job. However, you will need to use bracket indexing to select a job from the array. + +For example, for a job with id 19957691, I could peek at the output of the second +sample with this command: + +```{r} +qpeek 19957691[2] + +``` + +If I wanted to cancel all of the jobs in my job array I could do this: +```{r} +qdel 19957691[] + +``` diff --git a/scripts/mothur.batch b/scripts/mothur.batch new file mode 100644 index 0000000..1a03065 --- /dev/null +++ b/scripts/mothur.batch @@ -0,0 +1,66 @@ +## Mothur batch file + +# Tell mothur where to look for your input files (fastq and stability) +# Tell mothur where to store the output files +# Give mothur an alternative directory called tempdefault where it can look for files +# that are not in your input directory. These files are typically the silva database files, +# which are stored on Vincent's scratch flux location listed below. If you are running +# this script locally, you will need to change the path. +set.dir(input=/scratch/lsa_fluxm/michberr/HABS) +set.dir(output=/scratch/lsa_fluxm/michberr/HABS) +set.dir(tempdefault=/scratch/lsa_fluxm/vdenef/Databases/ssu_rRNA/Mothur/) + +# Set processors based on the number of samples you have and whether you're using flux or fluxm. +make.contigs(file=habs.files, processors=30) +summary.seqs(fasta=current) + +# Remove sequences with ambiguous bases and sequences that are not between 240-275 bp +screen.seqs(fasta=current, group=current, summary=current, maxambig=0, maxlength=275, minlength=240, maxhomop=8) +summary.seqs(fasta=current) + +# It would take forever to align every sequence, so we find just the unique ones +unique.seqs(fasta=current) +count.seqs(name=current, group=current) + +# Align sequences to the v4 region of the silva database +align.seqs(fasta=current, reference=silva.seed_v119.pcr.v4.unique.align) +screen.seqs(fasta=current, count=current, start=1968, end=11550) +summary.seqs(count=current) + +# Filter sequences to remove overhangs at both ends and gaps +# After this we rerun unique.seqs because we might have created +# some new redundancies from the filtering +filter.seqs(fasta=current, vertical=T, trump=.) +unique.seqs(fasta=current, count=current) + +# Precluster sequences allowing for up to 2 differences between sequences. +# The goal of this step is to eliminate sequences with errors due to sequencing technology +# by merging them with very similar sequences +pre.cluster(fasta=current, count=current, diffs=2) + +# Search for chimeras and remove them +chimera.uchime(fasta=current, count=current, dereplicate=t) +remove.seqs(fasta=current, accnos=current) +summary.seqs(count=current) + +# Classify sequences with a bayesian classifier using the silva database +classify.seqs(fasta=current, count=current, reference=silva.nr_v119.pcr.v4.align, taxonomy=silva.nr_v119.tax, cutoff=60) + +# Remove things which are classified as Chloroplast, Mitochondria, unknown, or Eukaryota +remove.lineage(fasta=current, count=current, taxonomy=current, taxon=Chloroplast-Mitochondria-unknown-Eukaryota) +summary.seqs(count=current) + +# Remove groups such as mock communities that you won't use for further analysis +remove.groups(count=current, fasta=current, taxonomy=current, groups=Mock1-Mock2) +summary.seqs(count=current) + +# Cluster sequences into OTUs. To save memory/time we first split sequences by taxlevel 4 (order) and +# then cluster from there. Read mothur wiki for more info. +cluster.split(fasta=current, count=current, taxonomy=current, splitmethod=classify, taxlevel=4, cutoff=0.15) + +# Determine how many sequences are in each OTU, using a .03 similarity cutoff +make.shared(list=current, count=current, label=0.03) + +# Generate a consensus taxonomy for each OTU +classify.otu(list=current, count=current, taxonomy=current, label=0.03) + diff --git a/scripts/mothur.pbs b/scripts/mothur.pbs new file mode 100644 index 0000000..b183b1a --- /dev/null +++ b/scripts/mothur.pbs @@ -0,0 +1,30 @@ +#### PBS preamble +#PBS -N mothur +#PBS -M michberr@umich.edu +#PBS -m ae + +#PBS -l nodes=1:ppn=30,mem=600gb,walltime=36:00:00 +#PBS -V + +#PBS -A vdenef_fluxm +#PBS -l qos=flux +#PBS -q fluxm + +#PBS -j oe + +#### End PBS preamble + +# Show list of CPUs you ran on, if you're running under PBS +if [ -n "$PBS_NODEFILE" ]; then cat $PBS_NODEFILE; fi + +# Change to the directory you submitted from +if [ -n "$PBS_O_WORKDIR" ]; then cd $PBS_O_WORKDIR; fi +pwd + +# Modules required +# module load med +# module load mothur/1.37.3 + + +# Put your job commands after this line +mothur mothur.batch