BioStructBenchmark/.pre-commit-config.yaml at main · DeltaDesign/BioStructBenchmark · GitHub

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# Pin to commit SHAs for supply chain security
# To update: verify new SHA, then update both rev and comment
repos:
  # General file checks
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: cef0300fd0fc4d2a87a85fa2093c6b283ea36f4b  # v5.0.0
    hooks:
      - id: trailing-whitespace
        exclude: \.(pdb|cif)$
      - id: end-of-file-fixer
        exclude: \.(pdb|cif)$
      - id: check-yaml
      - id: check-toml
      - id: check-ast
      - id: detect-private-key
      - id: debug-statements
      - id: check-merge-conflict

  # Ruff linting and formatting
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: f0b5944bef86f50d875305821a0ab0d8c601e465  # v0.8.4
    hooks:
      - id: ruff
        args: [--fix]
      - id: ruff-format

  # Type checking
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: f56614daa94d5cd733d3b7004c5df9caad267b4a  # v1.13.0
    hooks:
      - id: mypy
        args: [--strict, --show-error-codes, --ignore-missing-imports]
        exclude: ^(tests|scripts)/

  # Security scanning
  - repo: https://github.com/PyCQA/bandit
    rev: 8fd258abbac759d62863779f946d6a88e8eabb0f  # 1.8.0
    hooks:
      - id: bandit
        args: [-c, pyproject.toml]
        exclude: ^tests/

  # GitHub Actions security scanning
  - repo: https://github.com/zizmorcore/zizmor-pre-commit
    rev: d2c1833a059c66713cd52c032617766134679a0f  # v1.9.0
    hooks:
      - id: zizmor
        files: ^\.github/.*\.ya?ml$