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Add example data for antibody-antigen docking models use case #553
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gcroci2
opened on Jan 15, 2024
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- Ask A. Bonvin for data (or at least samples of them)
- They are in the process of publishing another study/dataset. They are also working on these systems and plan to generate a larger dataset.
- Evaluate if the complete dataset, which we don't need yet in this phase, can be used for a future phase of the project, i.e., running a satisfying training for a relevant research question
- Upload an example dataset somewhere accessible (e.g., Zenodo)
- For ranking the models
- https://data.sbgrid.org/dataset/686/
- Chat with Cunliang
- They seem to be 2 chains-things. What's the difference with PPIs we have and why we can't support already such complexes?
- Where are the native structures?
- Are 16 complexes enough to train a DL model?
- Brainstorm about the use case
- What about infrastructure for this?
- Chat with Cunliang
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