Greetings! I noticed that your team recently updated psm-utils, thanks:) I think it resolves an error I encountered when running ms2rescore (specifically in the mokapot phase).
However, I think this version also requires sqlalchemy>=2.0, whereas mspip requires sqlalchemy <2.0.
I can resolve this, if i remember correctly, by updating ms2rescore + keeping the updated psm-utils + manually installing cbor (which your team has fixed the lazy import), but I do not think it is that straightforward.
Thank you so much!:)
Greetings! I noticed that your team recently updated psm-utils, thanks:) I think it resolves an error I encountered when running ms2rescore (specifically in the
mokapotphase).However, I think this version also requires
sqlalchemy>=2.0, whereasmspiprequiressqlalchemy <2.0.I can resolve this, if i remember correctly, by updating
ms2rescore+ keeping the updatedpsm-utils+ manually installingcbor(which your team has fixed the lazy import), but I do not think it is that straightforward.Thank you so much!:)