RobustnessProfiles/run.R at main · CoMuNeLab/RobustnessProfiles · GitHub

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# 1) Generate standard profiles
 system2("Rscript", system.file("scripts","generate_synthetic_networks_and_profiles.R",
                               package="RobustnessProfiles"))

# 2) Generate entanglement profiles (requires Entanglement/*_MI-profile.csv files)
system2("Rscript", system.file("scripts","batch_entanglement_profiles.R",
                               package="RobustnessProfiles"))

# 3) Build normalized ribbons (standard)
system2("Rscript", system.file("scripts","build_profiles.R",
                               package="RobustnessProfiles"))

# 4) Build raw ribbons + pc bars (standard + entanglement)
system2("Rscript", system.file("scripts","build_profiles_with_entanglement.R",
                               package="RobustnessProfiles"))