_pkgdown.yml

title: MRcare
url: https://chongwulab.github.io/MRcare
template:
  bootstrap: 5
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    navbar-light-active-color: "#018D8D"  # Teal color for active links
  includes:
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        .table thead {
          background-color: #F5F5F5;
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      </style>
  opengraph:
    image:
      src: man/figures/logo.png
      alt: "MRcare logo"
  twitter:
    creator: "@yourtwitterhandle"
    card: summary_large_image

development:
  mode: auto
  version_label: info
  version_tooltip: "MRcare version"

navbar:
  type: light
  bg: light
  structure:
    left:  [reference, articles, tutorials, news]
    right: [search, github]
  components:
    github:
      icon: fab fa-github fa-lg
      href: https://github.com/ChongWuLab/MRcare
      aria-label: GitHub


search:
  enabled: true
  engine: lunr

home:
  sidebar:
    structure: [links, license, community, citation, authors, dev]
    components:
      citation:
        title: Citation
        text: >
          Zhongming Xie, Wanheng Zhang, Jingshen Wang, and Chong Wu (2025+). Winner's Curse Free Robust Mendelian Randomization with Summary Data. Journal of the American Statistical Association.

reference:
- title: "Package Documentation"
  desc: "Package overview and introduction"
  contents:
  - MRcare-package
- title: "Main Functions"
  desc: "Primary functions for MR analysis"
  contents:
  - mr_care
  - RIVW
  - CARE2_boot
- title: "Data Processing"
  desc: "Functions for preprocessing GWAS data"
  contents:
  - preprocess_gwas_data
- title: "Configuration"
  desc: "Configuration functions"
  contents:
  - configure_mrcare
  - get_mrcare_config
  - check_hf_connection
- title: "Visualization"
  desc: "Functions for visualizing results"
  contents: 
  - plot_care
  - plot_scatter
  - plot_funnel
  - plot_combined
- title: "Utility Functions"
  desc: "Helper functions and methods"
  contents:
  - summary.mrcare
  - print.mrcare
  - format_care_results
  - extract_independent_variants