bacpage phylogeny emits a newick-formatted file called phylogeny.tree. While some downstream programs are fine with consuming things ending in .tree, others (notably auspice.us) would prefer they end in .nwk or .newick (microreact seems fine with .tree though). Having users rename files as part of a normal analysis workflow can be a bit error prone / unnecessary, could be better to emit a file extension that maximizes out-of-the-box usage by downstream tools.
bacpage phylogenyemits a newick-formatted file calledphylogeny.tree. While some downstream programs are fine with consuming things ending in.tree, others (notably auspice.us) would prefer they end in.nwkor.newick(microreact seems fine with.treethough). Having users rename files as part of a normal analysis workflow can be a bit error prone / unnecessary, could be better to emit a file extension that maximizes out-of-the-box usage by downstream tools.