segpro/run-cellpose.lsf at main · ChoBioLab/segpro · GitHub

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#BSUB -J cellpose
#BSUB -P acc_untreatedIBD
#BSUB -q gpu
#BSUB -gpu num=1
#BSUB -R a10080g
#BSUB -n 20
#BSUB -R rusage[mem=60GB]
#BSUB -R span[hosts=1]
#BSUB -W 08:00
#BSUB -u christopher.tastad@mssm.edu
#BSUB -o output_%J.stdout
#BSUB -eo error_%J.stderr


source /hpc/users/tastac01/micromamba/etc/profile.d/micromamba.sh
eval "$(micromamba shell hook --shell bash)"
micromamba activate cellpose4


/sc/arion/projects/untreatedIBD/ctastad/projects/segpro/run-cellpose.sh

#export http_proxy=http://172.28.7.1:3128
#export https_proxy=http://172.28.7.1:3128
#export all_proxy=http://172.28.7.1:3128
#export no_proxy=localhost,*.chimera.hpc.mssm.edu,172.28.0.0/16
#
#WORK_DIR="/sc/arion/projects/untreatedIBD/ctastad/projects/segpro"
#
#ml singularity
#
#singularity exec \
#  -B "$WORK_DIR":"$WORK_DIR" \
#  docker://public.ecr.aws/chobiolab/segpro:1 "$WORK_DIR"/run-cellpose.sh
#