hubmap-xenium-submitter/environment.yml at main · ChoBioLab/hubmap-xenium-submitter · GitHub

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name: hubmap_conversion
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=4.5
  - bzip2=1.0.8
  - ca-certificates=2025.8.3
  - ld_impl_linux-64=2.44
  - libexpat=2.7.1
  - libffi=3.4.6
  - libgcc=15.1.0
  - libgcc-ng=15.1.0
  - libgomp=15.1.0
  - liblzma=5.8.1
  - libnsl=2.0.1
  - libsqlite=3.50.4
  - libuuid=2.38.1
  - libxcrypt=4.4.36
  - libzlib=1.3.1
  - ncurses=6.5
  - openssl=3.5.1
  - pip=25.2
  - python=3.10.18
  - readline=8.2
  - setuptools=80.9.0
  - tk=8.6.13
  - wheel=0.45.1
  - pip:
      - numpy==2.2.6
      - pandas==2.3.1
      - pyarrow==21.0.0
      - python-dateutil==2.9.0.post0
      - pytz==2025.2
      - six==1.17.0
      - tifffile==2025.5.10
      - tzdata==2025.2
prefix: /sc/arion/projects/untreatedIBD/ctastad/conda/envs/hubmap_conversion