ENCODExplorer/NAMESPACE at master · CharlesJB/ENCODExplorer · GitHub

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# Generated by roxygen2: do not edit by hand

export(buildConsensusPeaks)
export(buildExpressionSummary)
export(consensus)
export(createDesign)
export(downloadEncode)
export(file_metadata)
export(files)
export(fuzzySearch)
export(get_encode_df)
export(get_encode_df_demo)
export(get_encode_df_full)
export(metric)
export(metric_data)
export(peaks)
export(queryConsensusPeaks)
export(queryEncode)
export(queryEncodeGeneric)
export(queryExpressionGeneric)
export(queryGeneExpression)
export(queryTranscriptExpression)
export(raw_data)
export(searchEncode)
export(searchToquery)
export(shinyEncode)
exportClasses(ENCODEBindingConsensus)
exportClasses(ENCODEExpressionSummary)
exportClasses(ENCODESummary)
exportMethods("names<-")
exportMethods(length)
exportMethods(metadata)
exportMethods(names)
exportMethods(show)
import(AnnotationHub)
import(data.table)
import(stringr)
import(tools)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,reduce)
importFrom(S4Vectors,mcols)
importFrom(dplyr,filter)
importFrom(dplyr,setdiff)
importFrom(jsonlite,fromJSON)
importFrom(methods,is)
importFrom(rtracklayer,import)
importFrom(stringi,stri_detect_regex)
importFrom(tidyr,spread)
importFrom(utils,download.file)
importFrom(utils,menu)
importMethodsFrom(GenomicRanges,countOverlaps)
importMethodsFrom(GenomicRanges,findOverlaps)
importMethodsFrom(S4Vectors,aggregate)
importMethodsFrom(S4Vectors,from)
importMethodsFrom(S4Vectors,metadata)
importMethodsFrom(S4Vectors,to)