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Removed mentions to slurm_array as an option
1 parent b7d5393 commit 4b31646

4 files changed

Lines changed: 4 additions & 4 deletions

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bash/stopgap_run

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Original file line numberDiff line numberDiff line change
@@ -106,7 +106,7 @@ elif [ "${run_type}" = "slurm" ]; then
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else
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echo 'ACHTUNG!!! Invalid run_type!!!'
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echo 'Only supported run_types are "local", "sge", "slurm" and "slurm_array"!!!'
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echo 'Only supported run_types are "local", "sge", and "slurm"!!!'
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exit 1
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fi
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config/pca/sg_run.cfg

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@@ -3,7 +3,7 @@
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# You may need to modify this file to match your actual computing environment!
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##### RUN OPTIONS #####
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run_type='local' # Types supported are 'local', 'sge', 'slurm' and 'slurm_array', for local, SGE-cluster and slurm-cluster submissions.
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run_type='local' # Types supported are 'local', 'sge', and 'slurm' for local, SGE-cluster and slurm-cluster submissions.
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n_cores=32 # Number of cores (CPU) for subtomogram alignment parallelization. They don't necessarily run all on the same computing node.
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queue='scicore' # Partition (queue) for alignment jobs. Ignored for local jobs.
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mem_limit='1G' # Amount of memory per CPU (G = gigabytes). Ignored for local jobs.

config/subtomo/sg_run.cfg

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Original file line numberDiff line numberDiff line change
@@ -3,7 +3,7 @@
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# You may need to modify this file to match your actual computing environment!
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##### RUN OPTIONS #####
6-
run_type='local' # Types supported are 'local', 'sge', 'slurm' and 'slurm_array', for local, SGE-cluster and slurm-cluster submissions.
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run_type='local' # Types supported are 'local', 'sge', and 'slurm' for local, SGE-cluster and slurm-cluster submissions.
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n_cores=32 # Number of cores (CPU) for subtomogram alignment parallelization. They don't necessarily run all on the same computing node.
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queue='scicore' # Partition (queue) for alignment jobs. Ignored for local jobs.
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mem_limit='1G' # Amount of memory per CPU (G = gigabytes). Ignored for local jobs.

config/vmap/sg_run.cfg

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -3,7 +3,7 @@
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# You may need to modify this file to match your actual computing environment!
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##### RUN OPTIONS #####
6-
run_type='local' # Types supported are 'local', 'sge', 'slurm' and 'slurm_array', for local, SGE-cluster and slurm-cluster submissions.
6+
run_type='local' # Types supported are 'local', 'sge', and 'slurm' for local, SGE-cluster and slurm-cluster submissions.
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n_cores=32 # Number of cores (CPU) for subtomogram alignment parallelization. They don't necessarily run all on the same computing node.
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queue='scicore' # Partition (queue) for alignment jobs. Ignored for local jobs.
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mem_limit='1G' # Amount of memory per CPU (G = gigabytes). Ignored for local jobs.

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