fix: set slurm walltime to 4 days (#108)

* chore: remove unused slurm script headers

* fix: set slurm walltime to 4 days (96 hours)

* chore: update CHANGELOG.md

Author: kelly-sovacool

CHANGELOG.md

@@ -1,8 +1,8 @@
 ## LOGAN development version
 
-- Removed old bindpaths and fixed ` /gs10 doesn't exist` error (#107, @samarth8392)
-- Increased pipeline walltime for slurm submission to 100 hours (#107, @samarth8392)
-- Minor documentation updates for setup and running LOGAN (#107, @samarth8392)
+- Removed old bindpaths and fixed ` /gs10 doesn't exist` error. (#107, @samarth8392)
+- Increased pipeline walltime for slurm submission to 4 days (96 hours). (#107, #108, @samarth8392)
+- Minor documentation updates for setup and running LOGAN. (#107, @samarth8392)
 
 ## LOGAN 0.3.2
 

assets/slurm_header_biowulf.sh

@@ -115,7 +115,7 @@ def cli():
 def run(main_path, output, _mode, force_all, **kwargs):
     """
     Run the workflow
-    
+
     Note: you must first run `logan init --output <output_dir>` to initialize
     the output directory.
     """
@@ -142,6 +142,7 @@ def run(main_path, output, _mode, force_all, **kwargs):
             force_all=force_all,
             pipeline_name="LOGAN",
             hpc_modules="nextflow/25",
+            hpc_walltime="4-00:00:00",
             **kwargs,
         )
     finally: