generated from CCBR/CCBR_SnakemakeTemplate
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aspen_dir=/data/CCBR_Pipeliner/Pipelines/ASPEN/sovacool-dev-aspen
workdir=/data/$USER/aspen_test_dev
bash $aspen_dir/aspen \
--runmode=init \
--workdir=$workdir
cp $aspen_dir/.test/*.tsv $workdir
bash $aspen_dir/aspen \
--runmode=dryrun \
--workdir=$workdirBuilding DAG of jobs...
MissingInputException in rule atac_calculate_regions_of_interest_for_diffatac in file /gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/ASPEN/sovacool-dev-aspen/workflow/rules/diffatac.smk, line 17:
Missing input files for rule atac_calculate_regions_of_interest_for_diffatac:
output: /gpfs/gsfs12/users/sovacoolkl/aspen_test_dev/results/peaks/genrich/fixed_width/ROI.genrich.narrowPeak, /gpfs/gsfs12/users/sovacoolkl/aspen_test_dev/results/peaks/genrich/fixed_width/ROI.genrich.bed, /gpfs/gsfs12/users/sovacoolkl/aspen_test_dev/results/peaks/genrich/fixed_width/ROI.genrich.gtf, /gpfs/gsfs12/users/sovacoolkl/aspen_test_dev/results/peaks/genrich/fixed_width/ROI.genrich.renormalized.narrowPeak
wildcards: peakcaller=genrich
affected files:
/gpfs/gsfs12/users/sovacoolkl/aspen_test_dev/results/peaks/genrich/fixed_width/DMSO.renormalized.fixed_width.consensus.narrowPeak
/gpfs/gsfs12/users/sovacoolkl/aspen_test_dev/results/peaks/genrich/fixed_width/AU.renormalized.fixed_width.consensus.narrowPeak
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