cryofm/pyproject.toml at main · ByteDance-Seed/cryofm · GitHub

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[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "cryofm"
dynamic = ["version"]
description = "CryoEM foundation model project"
readme = "README.md"
requires-python = ">=3.8"
license = "Apache-2.0"
authors = [
    {name = "Yi Zhou", email = "zhouyi.naive@bytedance.com"},
    {name = "Yilai Li", email = "yilai.li@bytedance.com"},
    {name = "Jing Yuan", email = "yuanjing.eugene@bytedance.com"},
]
keywords = ["cryoem", "foundation-model", "deep-learning"]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering",
]

dependencies = [
    "pandas",
    "numpy<2.0",
    "torch",
    "scipy",
    "mmengine",
    "monai",
    "mrcfile",
    "starfile>=0.4.12,!=0.11,!=0.12,!=0.111",
    "xmltodict",
    "requests",
    "accelerate",
    "tqdm",
    "einops",
    "diffusers",
    "safetensors",
    "lightning",
    "torchdiffeq",
    "filelock",
    "scikit-image",
    "wandb",
    "mmcv-lite",
    "matplotlib",
    "huggingface_hub",
]

[project.optional-dependencies]
dev = [
    "ruff>=0.1.0",
]

[project.scripts]
cfm = "cryofm.cli:main"

[project.urls]
Homepage = "https://bytedance-seed.github.io/cryofm/"
Documentation = "https://bytedance-seed.github.io/cryofm/docs/"
Repository = "https://github.com/ByteDance-Seed/cryofm"
Issues = "https://github.com/ByteDance-Seed/cryofm/issues"

[tool.setuptools]
package-dir = {"" = "src"}

[tool.setuptools.dynamic]
version = {attr = "cryofm.__version__"}

[tool.setuptools.packages.find]
where = ["src"]

[tool.ruff]
line-length = 100
target-version = "py38"
select = [
    "E",   # pycodestyle errors
    "W",   # pycodestyle warnings
    "F",   # pyflakes
    "I",   # isort
    "B",   # flake8-bugbear
]
ignore = []

[tool.ruff.per-file-ignores]
"__init__.py" = ["F401"]  # Allow unused imports in __init__.py