usage: ./kml.R [-h] --input INPUT --metadata METADATA --nclusters NCLUSTERS
--algorithm ALGORITHM --subset SUBSET --transformation
TRANSFORMATION --level LEVEL
Command Line Argument Parsing in R
options:
-h, --help show this help message and exit
--input INPUT Input .rds with count matrices per taxa
--metadata METADATA Input metadata path
--nclusters NCLUSTERS
Number of trajectories to generate per taxa.
--algorithm ALGORITHM
Clustering algorithm to use. If you're unsure use
parWithEuclidean_rndm
--subset SUBSET Naming variable only. Is this data a particular
subset?
--transformation TRANSFORMATION
Naming variable only. Is this data transformed?
--level LEVEL Naming variable only. What taxonomic level does the
data represent?