diff --git a/README.md b/README.md index 497997a..e925882 100644 --- a/README.md +++ b/README.md @@ -51,18 +51,18 @@ If you find a bug or want an enhancement, please submit an issue [here](https:// ## How to cite -### Qploidy - Standardization +### Qploidy - for Standardization Taniguti, C. H., Lau, J., Hochhaus, T., Arias, D. C. L., Hokanson, S. C., Zlesak, D. C., Byrne, D. H., Klein, P. E., & Riera-Lizarazu, O. (2025). Exploring chromosomal variations in garden roses: Insights from high-density SNP array data and a new tool, Qploidy. The Plant Genome, e70044. https://doi.org/10.1002/tpg2.70044 -### Qploidy2 - HMM and grid approach BAF model selection +### Qploidy2 - for HMM and grid approach BAF model selection Manuscript in preparation. Please contact the author for more information. -### nQuack - EM approach BAF model selection +### nQuack - for EM approach BAF model selection Gaynor, M., Landis, J., O'Connor, T., Laport, R., Doyle, J., Soltis, D., Ponciano, J., & Soltis, P. (2024). "nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity." diff --git a/inst/app/www/Qploidy2_logo.png b/inst/app/www/Qploidy2_logo.png index 321c334..8a7bd37 100644 Binary files a/inst/app/www/Qploidy2_logo.png and b/inst/app/www/Qploidy2_logo.png differ diff --git a/inst/logo.svg b/inst/logo.svg index 3cc82c5..7c6f022 100644 --- a/inst/logo.svg +++ b/inst/logo.svg @@ -22,11 +22,215 @@ xmlns:dc="http://purl.org/dc/elements/1.1/"> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + offset="0.0017094" + style="stop-color:#7b0410;stop-opacity:1;" /> + gradientTransform="matrix(1.1688243,0,0,1.1688243,-18.390598,-1.92338)" /> + - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + Qploidy - - - - - - - - - - - + style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:25.478px;font-family:Tahoma;-inkscape-font-specification:Tahoma;font-variant-ligatures:normal;font-variant-caps:normal;font-variant-numeric:normal;font-feature-settings:normal;text-align:start;writing-mode:lr-tb;text-anchor:start;fill:url(#linearGradient18);fill-opacity:1;stroke:none;stroke-width:0.636948;stroke-opacity:1">Qploidy + + + + + +