Hello,
It could really be a very usefull app. Unfortunately, when I try callPeaks on the provided test datafile, the program get killed. I tried to compile with different optimization flags, but then it crashed even earlier. The accompanying python scripts and HIFI main program worked without issues.
The command I used was copy&pasted from readme:
src/callPeaks examples_output/Rao_GM12878.hg19.chr9_example.chr9_chr9.RF.HIFI_MRF.tsv 50000 100000 chr9 examples/hg19.HindIII_fragments.bed 20000
And the response was:
Reading RF fileAllocating memory Done allocating memory Reading matrix...Looking for badrows... Nb bad = 0 Calculating E matrix Calculating cumulative matrix Killed
I use Ubuntu 18.04, 15.6Gb RAM
I hope you could resolve this issues.
Best regards.
Hello,
It could really be a very usefull app. Unfortunately, when I try callPeaks on the provided test datafile, the program get killed. I tried to compile with different optimization flags, but then it crashed even earlier. The accompanying python scripts and HIFI main program worked without issues.
The command I used was copy&pasted from readme:
src/callPeaks examples_output/Rao_GM12878.hg19.chr9_example.chr9_chr9.RF.HIFI_MRF.tsv 50000 100000 chr9 examples/hg19.HindIII_fragments.bed 20000And the response was:
Reading RF fileAllocating memory Done allocating memory Reading matrix...Looking for badrows... Nb bad = 0 Calculating E matrix Calculating cumulative matrix KilledI use Ubuntu 18.04, 15.6Gb RAM
I hope you could resolve this issues.
Best regards.