update software blurbs+urls

warrenlr · warrenlr · commit e33bdd095a5d · 2026-03-10T14:04:03.000-07:00
reflects the new github organization
diff --git a/_includes/software-content.html b/_includes/software-content.html
diff --git a/softwareblurbs/abyss.txt b/softwareblurbs/abyss.txt
@@ -1,6 +1,6 @@
 abysslogo.png
 ABySS
-https://github.com/bcgsc/abyss
+https://github.com/birollab/abyss
 brew install abyss
 conda install -c bioconda abyss
 docker run quay.io/biocontainers/abyss
diff --git a/softwareblurbs/abyssexplorer.txt b/softwareblurbs/abyssexplorer.txt
@@ -1,6 +1,6 @@
 transparent.png
 ABySS-explorer
-https://github.com/bcgsc/abyss-explorer
+https://github.com/birollab/abyss-explorer
 brew install brewsci/bio/abyss-explorer
 
 
diff --git a/softwareblurbs/ampdup.txt b/softwareblurbs/ampdup.txt
@@ -1,6 +1,6 @@
 ampduplogo.png
 AMPd-up
-https://github.com/bcgsc/ampd-up
+https://github.com/birollab/ampd-up
 
 conda install -c bioconda ampd-up
 docker run quay.io/biocontainers/ampd-up
diff --git a/softwareblurbs/arcs.txt b/softwareblurbs/arcs.txt
@@ -1,6 +1,6 @@
 arcslogo.png
 ARCS / ARKS
-https://github.com/bcgsc/arcs
+https://github.com/birollab/arcs
 brew install brewsci/bio/arcs
 conda install -c bioconda arcs
 docker run quay.io/biocontainers/arcs
diff --git a/softwareblurbs/biobloomtools.txt b/softwareblurbs/biobloomtools.txt
@@ -1,6 +1,6 @@
 transparent.png
 BioBloom Tools
-https://github.com/bcgsc/biobloom
+https://github.com/birollab/biobloom
 brew install brewsci/bio/biobloomtools
 conda install -c bioconda biobloomtools
 docker run quay.io/biocontainers/biobloomtools
diff --git a/softwareblurbs/chopstitch.txt b/softwareblurbs/chopstitch.txt
@@ -1,6 +1,6 @@
 transparent.png
 ChopStitch
-https://github.com/bcgsc/ChopStitch
+https://github.com/birollab/ChopStitch
 
 
 
diff --git a/softwareblurbs/dida.txt b/softwareblurbs/dida.txt
@@ -1,6 +1,6 @@
 didalogo.jpeg
 DIDA
-https://github.com/bcgsc/dida
+https://github.com/birollab/dida
 brew install brewsci/bio/dida
 
 
diff --git a/softwareblurbs/gappredict.txt b/softwareblurbs/gappredict.txt
@@ -1,6 +1,6 @@
 transparent.png
 GapPredict
-https://github.com/bcgsc/GapPredict
+https://github.com/birollab/GapPredict
 
 
 
diff --git a/softwareblurbs/goldpolish.txt b/softwareblurbs/goldpolish.txt
@@ -1,6 +1,6 @@
 goldpolish-logo.png
 GoldPolish
-https://github.com/bcgsc/goldpolish
+https://github.com/birollab/goldpolish
 
 
 
diff --git a/softwareblurbs/goldrush.txt b/softwareblurbs/goldrush.txt
@@ -1,6 +1,6 @@
 goldrushlogo.png
 GoldRush
-https://github.com/bcgsc/goldrush
+https://github.com/birollab/goldrush
 
 conda install -c bioconda goldrush
 docker run quay.io/biocontainers/goldrush
diff --git a/softwareblurbs/hlaminer.txt b/softwareblurbs/hlaminer.txt
@@ -1,6 +1,6 @@
 hlaminer-logo.png
 HLAminer
-https://github.com/bcgsc/HLAminer
+https://github.com/birollab/HLAminer
 
 
 
diff --git a/softwareblurbs/kollector.txt b/softwareblurbs/kollector.txt
@@ -1,6 +1,6 @@
 transparent.png
 Kollector
-https://github.com/bcgsc/kollector
+https://github.com/birollab/kollector
 brew install brewsci/science/kollector
 
 
diff --git a/softwareblurbs/konnector.txt b/softwareblurbs/konnector.txt
@@ -1,6 +1,6 @@
 transparent.png
 Konnector
-https://github.com/bcgsc/abyss
+https://github.com/birollab/abyss
 brew install abyss
 conda install -c bioconda abyss
 docker run bcgsc/abyss
diff --git a/softwareblurbs/links.txt b/softwareblurbs/links.txt
@@ -1,6 +1,6 @@
 linkslogo.png
 LINKS
-https://github.com/bcgsc/LINKS
+https://github.com/birollab/LINKS
 brew install brewsci/bio/links-scaffolder
 conda install -c bioconda links
 docker run quay.io/biocontainers/links
diff --git a/softwareblurbs/longstitch.txt b/softwareblurbs/longstitch.txt
@@ -1,6 +1,6 @@
 longstitchlogo.png
 LongStitch
-https://github.com/bcgsc/longstitch
+https://github.com/birollab/longstitch
 
 conda install -c bioconda longstitch
 docker run quay.io/biocontainers/longstitch
diff --git a/softwareblurbs/map.txt b/softwareblurbs/map.txt
@@ -1,6 +1,6 @@
 map-logo.png
 MAP
-https://github.com/bcgsc/MAP
+https://github.com/birollab/MAP
 
 
 
diff --git a/softwareblurbs/mtgrasp.txt b/softwareblurbs/mtgrasp.txt
@@ -1,6 +1,6 @@
 transparent.png
 mtGrasp
-https://github.com/bcgsc/mtgrasp
+https://github.com/birollab/mtgrasp
 
 conda install -c bioconda mtgrasp
 docker run quay.io/biocontainers/mtgrasp
diff --git a/softwareblurbs/nanosim.txt b/softwareblurbs/nanosim.txt
@@ -1,6 +1,6 @@
 nanosimlogo.png
 NanoSim
-https://github.com/bcgsc/NanoSim
+https://github.com/birollab/NanoSim
 
 conda install -c bioconda nanosim
 docker run quay.io/biocontainers/nanosim
diff --git a/softwareblurbs/ntcard.txt b/softwareblurbs/ntcard.txt
@@ -1,6 +1,6 @@
 ntCardlogo.png
 ntCard
-https://github.com/bcgsc/ntCard
+https://github.com/birollab/ntCard
 brew install brewsci/bio/ntcard
 conda install -c bioconda ntcard
 docker run quay.io/biocontainers/ntcard
diff --git a/softwareblurbs/ntedit-sealer.txt b/softwareblurbs/ntedit-sealer.txt
@@ -1,6 +1,6 @@
 ntedit-sealer.png
 Genome sequence polishing protocol
-https://github.com/bcgsc/ntedit_sealer_protocol
+https://github.com/birollab/ntedit_sealer_protocol
 brew install brewsci/bio/nthits ntedit abyss
 conda install -c bioconda nthits ntedit abyss
 
diff --git a/softwareblurbs/ntedit.txt b/softwareblurbs/ntedit.txt
@@ -1,6 +1,6 @@
 nteditlogo.png
 ntEdit
-https://github.com/bcgsc/ntEdit
+https://github.com/birollab/ntEdit
 brew install brewsci/bio/ntedit
 conda install -c bioconda ntedit
 docker run quay.io/biocontainers/ntedit
diff --git a/softwareblurbs/nthash.txt b/softwareblurbs/nthash.txt
@@ -1,6 +1,6 @@
 ntHashlogo.png
 ntHash
-https://github.com/bcgsc/ntHash
+https://github.com/birollab/ntHash
 
 
 
diff --git a/softwareblurbs/nthits.txt b/softwareblurbs/nthits.txt
@@ -1,6 +1,6 @@
 nthits-logo.png
 ntHits
-https://github.com/bcgsc/ntHits
+https://github.com/birollab/ntHits
 brew install brewsci/bio/nthits
 conda install -c bioconda nthits
 docker run quay.io/biocontainers/nthits
diff --git a/softwareblurbs/ntjoin.txt b/softwareblurbs/ntjoin.txt
@@ -1,6 +1,6 @@
 ntJoinlogo.png
 ntJoin
-https://github.com/bcgsc/ntJoin
+https://github.com/birollab/ntJoin
 brew install brewsci/bio/ntjoin
 conda install -c bioconda ntjoin
 docker run quay.io/biocontainers/ntjoin
diff --git a/softwareblurbs/ntlink.txt b/softwareblurbs/ntlink.txt
@@ -1,6 +1,6 @@
 ntlinklogo.png
 ntLink
-https://github.com/bcgsc/ntLink
+https://github.com/birollab/ntLink
 brew install brewsci/bio/ntlink
 conda install -c bioconda ntlink
 docker run quay.io/biocontainers/ntlink
diff --git a/softwareblurbs/ntroot.txt b/softwareblurbs/ntroot.txt
@@ -1,6 +1,6 @@
 ntroot-logo.png
 ntRoot
-https://github.com/bcgsc/ntroot
+https://github.com/birollab/ntroot
 
 conda install -c bioconda ntroot
 docker run quay.io/biocontainers/ntroot
diff --git a/softwareblurbs/ntstat.txt b/softwareblurbs/ntstat.txt
@@ -1,6 +1,6 @@
 transparent.png
 ntStat
-https://github.com/bcgsc/ntStat
+https://github.com/birollab/ntStat
 
 conda install bioconda::ntstat
 docker run quay.io/biocontainers/ntstat
diff --git a/softwareblurbs/ntsynt-viz.txt b/softwareblurbs/ntsynt-viz.txt
@@ -1,6 +1,6 @@
 ntsyntviz-logo.png
 ntSynt-viz
-https://github.com/bcgsc/ntSynt-viz
+https://github.com/birollab/ntSynt-viz
 
 conda install -c bioconda ntsynt-viz
 
diff --git a/softwareblurbs/ntsynt.txt b/softwareblurbs/ntsynt.txt
@@ -1,6 +1,6 @@
 ntsynt-logo.png
 ntSynt
-https://github.com/bcgsc/ntSynt
+https://github.com/birollab/ntSynt
 
 conda install -c bioconda ntsynt
 docker run quay.io/biocontainers/ntsynt
diff --git a/softwareblurbs/pass.txt b/softwareblurbs/pass.txt
@@ -1,6 +1,6 @@
 pass-logo.png
 PASS
-https://github.com/bcgsc/pass
+https://github.com/birollab/pass
 
 conda install -c bioconda pass
 docker run quay.io/biocontainers/pass
diff --git a/softwareblurbs/peekseq.txt b/softwareblurbs/peekseq.txt
@@ -1,6 +1,6 @@
 peekseq-logo.png
 peekseq
-https://github.com/bcgsc/peekseq
+https://github.com/birollab/peekseq
 
 conda install -c bioconda peekseq
 docker run quay.io/biocontainers/peekseq
diff --git a/softwareblurbs/physlr.txt b/softwareblurbs/physlr.txt
@@ -1,6 +1,6 @@
 physlrlogo.png
 Physlr
-https://github.com/bcgsc/physlr
+https://github.com/birollab/physlr
 
 conda install -c bioconda physlr
 docker run quay.io/biocontainers/physlr
diff --git a/softwareblurbs/rails.txt b/softwareblurbs/rails.txt
@@ -1,6 +1,6 @@
 railslogo.png
 Cobbler/RAILS
-https://github.com/bcgsc/RAILS
+https://github.com/birollab/RAILS
 brew install brewsci/bio/rails
 
 
diff --git a/softwareblurbs/rampage.txt b/softwareblurbs/rampage.txt
@@ -1,6 +1,6 @@
 rampagelogo.png
 rAMPage
-https://github.com/bcgsc/rampage
+https://github.com/birollab/rampage
 
 
 
diff --git a/softwareblurbs/rnabloom.txt b/softwareblurbs/rnabloom.txt
@@ -1,6 +1,6 @@
 rnabloomlogo.png
 RNA-Bloom
-https://github.com/bcgsc/RNA-Bloom
+https://github.com/birollab/RNA-Bloom
 
 conda install -c bioconda rnabloom
 docker run quay.io/biocontainers/rnabloom
diff --git a/softwareblurbs/rnascoop.txt b/softwareblurbs/rnascoop.txt
@@ -1,6 +1,6 @@
 rnascooplogo.png
 RNA-Scoop
-https://github.com/bcgsc/RNA-Scoop
+https://github.com/birollab/RNA-Scoop
 
 
 
diff --git a/softwareblurbs/sealer.txt b/softwareblurbs/sealer.txt
@@ -1,6 +1,6 @@
 sealerlogo.png
 Sealer
-https://github.com/bcgsc/abyss
+https://github.com/birollab/abyss
 brew install abyss
 conda install -c bioconda abyss
 docker run quay.io/biocontainers/abyss
diff --git a/softwareblurbs/ssake.txt b/softwareblurbs/ssake.txt
@@ -1,6 +1,6 @@
 ssake-logo.png
 SSAKE
-https://github.com/bcgsc/SSAKE
+https://github.com/birollab/SSAKE
 
 conda install -c bioconda ssake
 docker run quay.io/biocontainers/ssake
diff --git a/softwareblurbs/tamper.txt b/softwareblurbs/tamper.txt
@@ -1,6 +1,6 @@
 tamperlogo.png
 tAMPer
-https://github.com/bcgsc/tAMPer
+https://github.com/birollab/tAMPer
 
 
 
diff --git a/softwareblurbs/tasr.txt b/softwareblurbs/tasr.txt
@@ -1,6 +1,6 @@
 tasr-logo.png
 TASR
-https://github.com/bcgsc/TASR
+https://github.com/birollab/TASR
 
 
 
diff --git a/softwareblurbs/tigmint.txt b/softwareblurbs/tigmint.txt
@@ -1,6 +1,6 @@
 tigmintlogo.png
 Tigmint
-https://github.com/bcgsc/tigmint
+https://github.com/birollab/tigmint
 brew install brewsci/bio/tigmint
 conda install -c bioconda tigmint
 docker run quay.io/biocontainers/tigmint
diff --git a/softwareblurbs/transabyss.txt b/softwareblurbs/transabyss.txt
@@ -1,6 +1,6 @@
 transparent.png
 Trans-ABySS
-https://github.com/bcgsc/transabyss
+https://github.com/birollab/transabyss
 brew install brewsci/science/trans-abyss
 conda install transabyss
 docker run quay.io/biocontainers/transabyss
diff --git a/softwareblurbs/unikseq.txt b/softwareblurbs/unikseq.txt
@@ -1,6 +1,6 @@
 unikseq-logo.png
 unikseq
-https://github.com/bcgsc/unikseq
+https://github.com/birollab/unikseq
 
 conda install -c bioconda unikseq
 docker run quay.io/biocontainers/unikseq
diff --git a/softwareblurbs/xmatchview.txt b/softwareblurbs/xmatchview.txt
@@ -1,6 +1,6 @@
 xmatchviewlogo.png
 xmatchview
-https://github.com/bcgsc/xmatchview
+https://github.com/birollab/xmatchview
 brew install brewsci/bio/xmatchview
 conda install -c bioconda xmatchview
 docker run quay.io/biocontainers/xmatchview
