README.md

Genetta-Server

Genetta requires a neo4j server active and running with the APOC, and GDS plugins enabled. Genetta contains a docker-compose file which can be used to fully setup and start the web application.

Installation

Docker

1. Download and install docker https://docs.docker.com/get-docker/
2. Navigate to this directory.
3. sudo chmod +x startup.sh
4. ./startup

Without Docker

If docker is not available, here is a brief guide to installing neo4j with links to more comprehensive installation guides. Note this guide assumes a Debian based operating system.

• Install Neo4j (https://neo4j.com/docs/operations-manual/current/installation/)
  1. $ wget -O - https://debian.neo4j.com/neotechnology.gpg.key | sudo apt-key add -
  2. $ echo 'deb https://debian.neo4j.com stable latest' | sudo tee -a /etc/apt/sources.list.d/neo4j.list
  3. $ sudo apt-get update
  4. $ sudo apt-get install neo4j=1:4.4.6
• Enable APOC (https://neo4j.com/labs/apoc/4.1/installation/)
  1. $ mv NEO4J_HOME/labs/apoc-4.4.0.3-core.jar $NEO4J_HOME/plugins (usually mv /var/lib/neo4j/labs/apoc-4.4.0.3-core.jar /var/lib/neo4j/plugins).
  2. $ sudo neo4j restart
• Install GDS (https://neo4j.com/docs/graph-data-science/current/installation/neo4j-server/)
  1. Download 'neo4j-graph-data-science-[version].jar' from the Neo4j Download Center
  2. Copy it into the $NEO4J_HOME/plugins directory (usually /var/lib/neo4j/plugins).
  3. Add dbms.security.procedures.unrestricted=gds.* and dbms.security.procedures.allowlist=gds.* to $NEO4J_HOME/conf/neo4j.conf (usually /var/lib/neo4j/conf/neo4j.conf).
  4. $ sudo neo4j restart