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Updated Input Formats (markdown)
Updated Quickstart (markdown)
Updated Output File Format (markdown)
Updated Home (markdown)
Updated HLA Vignette (markdown)
Updated Methods (markdown)
Updated CLI Parameters (markdown)
Updated Library Format Specification (markdown)
Updated Environment Variables (markdown)
Updated Installation (markdown)
Destroyed System Requirements (markdown)
Created Output File Format (markdown)
Destroyed Debug Output Format (markdown)
Created CLI Parameters (markdown)
Destroyed Reporting Methods (markdown)
Destroyed Libraries (markdown)
Destroyed Example Data Analysis (markdown)
Created HLA Vignette (markdown)