diff --git a/jbrowse/build.gradle b/jbrowse/build.gradle
index 4de29862b..0e597ab4e 100644
--- a/jbrowse/build.gradle
+++ b/jbrowse/build.gradle
@@ -30,7 +30,7 @@ dependencies {
 	external "org.apache.lucene:lucene-backward-codecs:${luceneVersion}"
 }
 
-def jbPkgTask = project.tasks.named("npm_run_jb-pkg")
+def jbPkgTask = project.tasks.named("npm_run_jb-sea")
 
 jbPkgTask.configure {
     outputs.cacheIf {false}
diff --git a/jbrowse/package-lock.json b/jbrowse/package-lock.json
index b2b8218e0..5a1abd52f 100644
--- a/jbrowse/package-lock.json
+++ b/jbrowse/package-lock.json
@@ -18,7 +18,6 @@
         "@labkey/api": "^1.39.0",
         "@labkey/components": "^6.32.2",
         "@mui/x-data-grid": "^7.28.1",
-        "@yao-pkg/pkg": "^6.3.2",
         "assert": "^2.1.0",
         "browserify-zlib": "^0.2.0",
         "buffer": "^6.0.3",
@@ -48,7 +47,9 @@
         "@types/react": "^18.3.0",
         "@types/react-dom": "^18.3.0",
         "rimraf": "^6.0.1",
-        "typescript": "^5.1.6"
+        "tar": "^7.4.3",
+        "typescript": "^5.1.6",
+        "unzipper": "^0.12.3"
       }
     },
     "node_modules/@adobe/css-tools": {
@@ -2218,6 +2219,7 @@
       "version": "8.0.2",
       "resolved": "https://registry.npmjs.org/@isaacs/cliui/-/cliui-8.0.2.tgz",
       "integrity": "sha512-O8jcjabXaleOG9DQ0+ARXWZBTfnP4WNAqzuiJK7ll44AmxGKv/J2M4TPjxjY3znBCfvBXFzucm1twdyFybFqEA==",
+      "dev": true,
       "dependencies": {
         "string-width": "^5.1.2",
         "string-width-cjs": "npm:string-width@^4.2.0",
@@ -2234,6 +2236,7 @@
       "version": "6.0.1",
       "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-6.0.1.tgz",
       "integrity": "sha512-n5M855fKb2SsfMIiFFoVrABHJC8QtHwVx+mHWP3QcEqBHYienj5dHSgjbxtC0WEZXYt4wcD6zrQElDPhFuZgfA==",
+      "dev": true,
       "engines": {
         "node": ">=12"
       },
@@ -2245,6 +2248,7 @@
       "version": "6.2.1",
       "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-6.2.1.tgz",
       "integrity": "sha512-bN798gFfQX+viw3R7yrGWRqnrN2oRkEkUjjl4JNn4E8GxxbjtG3FbrEIIY3l8/hrwUwIeCZvi4QuOTP4MErVug==",
+      "dev": true,
       "engines": {
         "node": ">=12"
       },
@@ -2255,12 +2259,14 @@
     "node_modules/@isaacs/cliui/node_modules/emoji-regex": {
       "version": "9.2.2",
       "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-9.2.2.tgz",
-      "integrity": "sha512-L18DaJsXSUk2+42pv8mLs5jJT2hqFkFE4j21wOmgbUqsZ2hL72NsUU785g9RXgo3s0ZNgVl42TiHp3ZtOv/Vyg=="
+      "integrity": "sha512-L18DaJsXSUk2+42pv8mLs5jJT2hqFkFE4j21wOmgbUqsZ2hL72NsUU785g9RXgo3s0ZNgVl42TiHp3ZtOv/Vyg==",
+      "dev": true
     },
     "node_modules/@isaacs/cliui/node_modules/string-width": {
       "version": "5.1.2",
       "resolved": "https://registry.npmjs.org/string-width/-/string-width-5.1.2.tgz",
       "integrity": "sha512-HnLOCR3vjcY8beoNLtcjZ5/nxn2afmME6lhrDrebokqMap+XbeW8n9TXpPDOqdGK5qcI3oT0GKTW6wC7EMiVqA==",
+      "dev": true,
       "dependencies": {
         "eastasianwidth": "^0.2.0",
         "emoji-regex": "^9.2.2",
@@ -2277,6 +2283,7 @@
       "version": "7.1.0",
       "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-7.1.0.tgz",
       "integrity": "sha512-iq6eVVI64nQQTRYq2KtEg2d2uU7LElhTJwsH4YzIHZshxlgZms/wIc4VoDQTlG/IvVIrBKG06CrZnp0qv7hkcQ==",
+      "dev": true,
       "dependencies": {
         "ansi-regex": "^6.0.1"
       },
@@ -2291,6 +2298,7 @@
       "version": "8.1.0",
       "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz",
       "integrity": "sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==",
+      "dev": true,
       "dependencies": {
         "ansi-styles": "^6.1.0",
         "string-width": "^5.0.1",
@@ -2307,6 +2315,7 @@
       "version": "4.0.1",
       "resolved": "https://registry.npmjs.org/@isaacs/fs-minipass/-/fs-minipass-4.0.1.tgz",
       "integrity": "sha512-wgm9Ehl2jpeqP3zw/7mo3kRHFp5MEDhqAdwy1fTGkHAwnkGOVsgpvQhL8B5n1qlb01jV3n/bI0ZfZp5lWA1k4w==",
+      "dev": true,
       "dependencies": {
         "minipass": "^7.0.4"
       },
@@ -3827,6 +3836,7 @@
       "version": "0.11.0",
       "resolved": "https://registry.npmjs.org/@pkgjs/parseargs/-/parseargs-0.11.0.tgz",
       "integrity": "sha512-+1VkjdD0QBLPodGrJUeqarH8VAIvQODIbwh9XpP5Syisf7YoQgsJKPNFoqqLQlu+VQ/tVSshMR6loPMn8U+dPg==",
+      "dev": true,
       "optional": true,
       "engines": {
         "node": ">=14"
@@ -4517,73 +4527,6 @@
       "resolved": "https://registry.npmjs.org/@xtuc/long/-/long-4.2.2.tgz",
       "integrity": "sha512-NuHqBY1PB/D8xU6s/thBgOAiAP7HOYDQ32+BFZILJ8ivkUkAHQnWfn6WhL79Owj1qmUnoN/YPhktdIoucipkAQ=="
     },
-    "node_modules/@yao-pkg/pkg": {
-      "version": "6.3.2",
-      "resolved": "https://registry.npmjs.org/@yao-pkg/pkg/-/pkg-6.3.2.tgz",
-      "integrity": "sha512-gd4fh8dVC5qnKQD8HTwQrVLvT8TyQqwE59ky3LHtnke+6fBcTTrWavtbsVOwdL09IWqY+eSB+2AGCrSUnZ4wwg==",
-      "dependencies": {
-        "@babel/generator": "^7.23.0",
-        "@babel/parser": "^7.23.0",
-        "@babel/types": "^7.23.0",
-        "@yao-pkg/pkg-fetch": "3.5.19",
-        "into-stream": "^6.0.0",
-        "minimist": "^1.2.6",
-        "multistream": "^4.1.0",
-        "picocolors": "^1.1.0",
-        "picomatch": "^4.0.2",
-        "prebuild-install": "^7.1.1",
-        "resolve": "^1.22.10",
-        "stream-meter": "^1.0.4",
-        "tar": "^7.4.3",
-        "tinyglobby": "^0.2.11",
-        "unzipper": "^0.12.3"
-      },
-      "bin": {
-        "pkg": "lib-es5/bin.js"
-      },
-      "engines": {
-        "node": ">=18.0.0"
-      }
-    },
-    "node_modules/@yao-pkg/pkg-fetch": {
-      "version": "3.5.19",
-      "resolved": "https://registry.npmjs.org/@yao-pkg/pkg-fetch/-/pkg-fetch-3.5.19.tgz",
-      "integrity": "sha512-EEURrS1Q5sSSAwaQ4zD0wZsquDiG8CroY3SCi7jYBoM0NG3eRA239mW6YMUYPNWUK4zCMhuK3bzFT5aIZP/rDg==",
-      "dependencies": {
-        "https-proxy-agent": "^5.0.0",
-        "node-fetch": "^2.6.6",
-        "picocolors": "^1.1.0",
-        "progress": "^2.0.3",
-        "semver": "^7.3.5",
-        "tar-fs": "^2.1.1",
-        "yargs": "^16.2.0"
-      },
-      "bin": {
-        "pkg-fetch": "lib-es5/bin.js"
-      }
-    },
-    "node_modules/@yao-pkg/pkg-fetch/node_modules/semver": {
-      "version": "7.7.1",
-      "resolved": "https://registry.npmjs.org/semver/-/semver-7.7.1.tgz",
-      "integrity": "sha512-hlq8tAfn0m/61p4BVRcPzIGr6LKiMwo4VM6dGi6pt4qcRkmNzTcWq6eCEjEh+qXjkMDvPlOFFSGwQjoEa6gyMA==",
-      "bin": {
-        "semver": "bin/semver.js"
-      },
-      "engines": {
-        "node": ">=10"
-      }
-    },
-    "node_modules/@yao-pkg/pkg/node_modules/picomatch": {
-      "version": "4.0.2",
-      "resolved": "https://registry.npmjs.org/picomatch/-/picomatch-4.0.2.tgz",
-      "integrity": "sha512-M7BAV6Rlcy5u+m6oPhAPFgJTzAioX/6B0DxyvDlo9l8+T3nLKbrczg2WLUyzd45L8RqfUMyGPzekbMvX2Ldkwg==",
-      "engines": {
-        "node": ">=12"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/jonschlinkert"
-      }
-    },
     "node_modules/accepts": {
       "version": "1.3.8",
       "resolved": "https://registry.npmjs.org/accepts/-/accepts-1.3.8.tgz",
@@ -4640,17 +4583,6 @@
         "node": ">=8.9"
       }
     },
-    "node_modules/agent-base": {
-      "version": "6.0.2",
-      "resolved": "https://registry.npmjs.org/agent-base/-/agent-base-6.0.2.tgz",
-      "integrity": "sha512-RZNwNclF7+MS/8bDg70amg32dyeZGZxiDuQmZxKLAlQjr3jGyLx+4Kkk58UO7D2QdgFIQCovuSuZESne6RG6XQ==",
-      "dependencies": {
-        "debug": "4"
-      },
-      "engines": {
-        "node": ">= 6.0.0"
-      }
-    },
     "node_modules/ajv": {
       "version": "8.17.1",
       "license": "MIT",
@@ -4978,6 +4910,7 @@
     },
     "node_modules/balanced-match": {
       "version": "1.0.2",
+      "dev": true,
       "license": "MIT"
     },
     "node_modules/base64-arraybuffer": {
@@ -5032,53 +4965,12 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
     },
-    "node_modules/bl": {
-      "version": "4.1.0",
-      "license": "MIT",
-      "dependencies": {
-        "buffer": "^5.5.0",
-        "inherits": "^2.0.4",
-        "readable-stream": "^3.4.0"
-      }
-    },
-    "node_modules/bl/node_modules/buffer": {
-      "version": "5.7.1",
-      "funding": [
-        {
-          "type": "github",
-          "url": "https://github.com/sponsors/feross"
-        },
-        {
-          "type": "patreon",
-          "url": "https://www.patreon.com/feross"
-        },
-        {
-          "type": "consulting",
-          "url": "https://feross.org/support"
-        }
-      ],
-      "license": "MIT",
-      "dependencies": {
-        "base64-js": "^1.3.1",
-        "ieee754": "^1.1.13"
-      }
-    },
-    "node_modules/bl/node_modules/readable-stream": {
-      "version": "3.6.2",
-      "license": "MIT",
-      "dependencies": {
-        "inherits": "^2.0.3",
-        "string_decoder": "^1.1.1",
-        "util-deprecate": "^1.0.1"
-      },
-      "engines": {
-        "node": ">= 6"
-      }
-    },
     "node_modules/bluebird": {
       "version": "3.7.2",
       "resolved": "https://registry.npmjs.org/bluebird/-/bluebird-3.7.2.tgz",
-      "integrity": "sha512-XpNj6GDQzdfW+r2Wnn7xiSAd7TM3jzkxGXBGTtWKuSXv1xUV+azxAm8jdWZN06QTQk+2N2XB9jRDkvbmQmcRtg=="
+      "integrity": "sha512-XpNj6GDQzdfW+r2Wnn7xiSAd7TM3jzkxGXBGTtWKuSXv1xUV+azxAm8jdWZN06QTQk+2N2XB9jRDkvbmQmcRtg==",
+      "dev": true,
+      "license": "MIT"
     },
     "node_modules/bn.js": {
       "version": "5.2.1",
@@ -5156,6 +5048,7 @@
       "version": "2.0.2",
       "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-2.0.2.tgz",
       "integrity": "sha512-Jt0vHyM+jmUBqojB7E1NIYadt0vI0Qxjxd2TErW94wDz+E2LAm5vKMXXwg6ZZBTHPuUlDgQHKXvjGBdfcF1ZDQ==",
+      "dev": true,
       "dependencies": {
         "balanced-match": "^1.0.0"
       }
@@ -5513,10 +5406,6 @@
         "url": "https://paulmillr.com/funding/"
       }
     },
-    "node_modules/chownr": {
-      "version": "1.1.4",
-      "license": "ISC"
-    },
     "node_modules/chrome-trace-event": {
       "version": "1.0.4",
       "license": "MIT",
@@ -5572,16 +5461,6 @@
         "node": ">=0.10.0"
       }
     },
-    "node_modules/cliui": {
-      "version": "7.0.4",
-      "resolved": "https://registry.npmjs.org/cliui/-/cliui-7.0.4.tgz",
-      "integrity": "sha512-OcRE68cOsVMXp1Yvonl/fzkQOyjLSu/8bhPDfQt0e0/Eb283TKP20Fs2MqoPsr9SwA595rRCA+QMzYc9nBP+JQ==",
-      "dependencies": {
-        "string-width": "^4.2.0",
-        "strip-ansi": "^6.0.0",
-        "wrap-ansi": "^7.0.0"
-      }
-    },
     "node_modules/clone-deep": {
       "version": "4.0.1",
       "resolved": "https://registry.npmjs.org/clone-deep/-/clone-deep-4.0.1.tgz",
@@ -5920,6 +5799,7 @@
       "version": "7.0.6",
       "resolved": "https://registry.npmjs.org/cross-spawn/-/cross-spawn-7.0.6.tgz",
       "integrity": "sha512-uV2QOWP2nWzsy2aMp8aRibhi9dlzF5Hgh5SHaB9OiTGEyDTiJJyx0uy51QXdyWbtAHNua4XJzUKca3OzKUd3vA==",
+      "dev": true,
       "dependencies": {
         "path-key": "^3.1.0",
         "shebang-command": "^2.0.0",
@@ -6218,19 +6098,6 @@
         }
       }
     },
-    "node_modules/decompress-response": {
-      "version": "6.0.0",
-      "license": "MIT",
-      "dependencies": {
-        "mimic-response": "^3.1.0"
-      },
-      "engines": {
-        "node": ">=10"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/sindresorhus"
-      }
-    },
     "node_modules/deep-equal": {
       "version": "1.1.2",
       "resolved": "https://registry.npmjs.org/deep-equal/-/deep-equal-1.1.2.tgz",
@@ -6250,13 +6117,6 @@
         "url": "https://github.com/sponsors/ljharb"
       }
     },
-    "node_modules/deep-extend": {
-      "version": "0.6.0",
-      "license": "MIT",
-      "engines": {
-        "node": ">=4.0.0"
-      }
-    },
     "node_modules/deepmerge": {
       "version": "4.3.1",
       "license": "MIT",
@@ -6377,13 +6237,6 @@
         "npm": "1.2.8000 || >= 1.4.16"
       }
     },
-    "node_modules/detect-libc": {
-      "version": "2.0.3",
-      "license": "Apache-2.0",
-      "engines": {
-        "node": ">=8"
-      }
-    },
     "node_modules/detect-node": {
       "version": "2.1.0",
       "license": "MIT"
@@ -6544,12 +6397,15 @@
       "version": "0.1.4",
       "resolved": "https://registry.npmjs.org/duplexer2/-/duplexer2-0.1.4.tgz",
       "integrity": "sha512-asLFVfWWtJ90ZyOUHMqk7/S2w2guQKxUI2itj3d92ADHhxUSbCMGi1f1cBcJ7xM1To+pE/Khbwo1yuNbMEPKeA==",
+      "dev": true,
+      "license": "BSD-3-Clause",
       "dependencies": {
         "readable-stream": "^2.0.2"
       }
     },
     "node_modules/eastasianwidth": {
       "version": "0.2.0",
+      "dev": true,
       "license": "MIT"
     },
     "node_modules/ee-first": {
@@ -6584,6 +6440,7 @@
     },
     "node_modules/emoji-regex": {
       "version": "8.0.0",
+      "dev": true,
       "license": "MIT"
     },
     "node_modules/emojis-list": {
@@ -6603,13 +6460,6 @@
         "node": ">= 0.8"
       }
     },
-    "node_modules/end-of-stream": {
-      "version": "1.4.4",
-      "license": "MIT",
-      "dependencies": {
-        "once": "^1.4.0"
-      }
-    },
     "node_modules/enhanced-resolve": {
       "version": "5.17.1",
       "license": "MIT",
@@ -6785,13 +6635,6 @@
         "safe-buffer": "^5.1.1"
       }
     },
-    "node_modules/expand-template": {
-      "version": "2.0.3",
-      "license": "(MIT OR WTFPL)",
-      "engines": {
-        "node": ">=6"
-      }
-    },
     "node_modules/express": {
       "version": "4.21.2",
       "resolved": "https://registry.npmjs.org/express/-/express-4.21.2.tgz",
@@ -7013,6 +6856,7 @@
     },
     "node_modules/foreground-child": {
       "version": "3.3.0",
+      "dev": true,
       "license": "ISC",
       "dependencies": {
         "cross-spawn": "^7.0.0",
@@ -7027,6 +6871,7 @@
     },
     "node_modules/foreground-child/node_modules/signal-exit": {
       "version": "4.1.0",
+      "dev": true,
       "license": "ISC",
       "engines": {
         "node": ">=14"
@@ -7219,26 +7064,16 @@
         "node": ">= 0.6"
       }
     },
-    "node_modules/from2": {
-      "version": "2.3.0",
-      "license": "MIT",
-      "dependencies": {
-        "inherits": "^2.0.1",
-        "readable-stream": "^2.0.0"
-      }
-    },
     "node_modules/fs": {
       "version": "0.0.1-security",
       "license": "ISC"
     },
-    "node_modules/fs-constants": {
-      "version": "1.0.0",
-      "license": "MIT"
-    },
     "node_modules/fs-extra": {
-      "version": "11.3.0",
-      "resolved": "https://registry.npmjs.org/fs-extra/-/fs-extra-11.3.0.tgz",
-      "integrity": "sha512-Z4XaCL6dUDHfP/jT25jJKMmtxvuwbkrD1vNSMFlo9lNLY2c5FHYSQgHPRZUjAB26TpDEoW9HCOgplrdbaPV/ew==",
+      "version": "11.3.1",
+      "resolved": "https://registry.npmjs.org/fs-extra/-/fs-extra-11.3.1.tgz",
+      "integrity": "sha512-eXvGGwZ5CL17ZSwHWd3bbgk7UUpF6IFHtP57NYYakPvHOs8GDgDe5KJI36jIJzDkJ6eJjuzRA8eBQb6SkKue0g==",
+      "dev": true,
+      "license": "MIT",
       "dependencies": {
         "graceful-fs": "^4.2.0",
         "jsonfile": "^6.0.1",
@@ -7299,14 +7134,6 @@
         "node": ">=6.9.0"
       }
     },
-    "node_modules/get-caller-file": {
-      "version": "2.0.5",
-      "resolved": "https://registry.npmjs.org/get-caller-file/-/get-caller-file-2.0.5.tgz",
-      "integrity": "sha512-DyFP3BM/3YHTQOCUL/w0OZHR0lpKeGrxotcHWcqNEdnltqFwXVfhEBQ94eIo34AfQpo0rGki4cyIiftY06h2Fg==",
-      "engines": {
-        "node": "6.* || 8.* || >= 10.*"
-      }
-    },
     "node_modules/get-intrinsic": {
       "version": "1.3.0",
       "resolved": "https://registry.npmjs.org/get-intrinsic/-/get-intrinsic-1.3.0.tgz",
@@ -7358,10 +7185,6 @@
       "resolved": "https://registry.npmjs.org/gff-nostream/-/gff-nostream-1.3.4.tgz",
       "integrity": "sha512-+UmB/NcaXAIj+V/jjZWW9NWGAL2cDkcTIIfia/LqAYWURBIWxwVkzC744q2WXB62IVb8DaF+8CWXGLm9EnQqNg=="
     },
-    "node_modules/github-from-package": {
-      "version": "0.0.0",
-      "license": "MIT"
-    },
     "node_modules/glob": {
       "version": "11.0.0",
       "resolved": "https://registry.npmjs.org/glob/-/glob-11.0.0.tgz",
@@ -7751,18 +7574,6 @@
       "resolved": "https://registry.npmjs.org/https-browserify/-/https-browserify-1.0.0.tgz",
       "integrity": "sha512-J+FkSdyD+0mA0N+81tMotaRMfSL9SGi+xpD3T6YApKsc3bGSXJlfXri3VyFOeYkfLRQisDk1W+jIFFKBeUBbBg=="
     },
-    "node_modules/https-proxy-agent": {
-      "version": "5.0.1",
-      "resolved": "https://registry.npmjs.org/https-proxy-agent/-/https-proxy-agent-5.0.1.tgz",
-      "integrity": "sha512-dFcAjpTQFgoLMzC2VwU+C/CbS7uRL0lWmxDITmqm7C+7F0Odmj6s9l6alZc6AELXhrnggM2CeWSXHGOdX2YtwA==",
-      "dependencies": {
-        "agent-base": "6",
-        "debug": "4"
-      },
-      "engines": {
-        "node": ">= 6"
-      }
-    },
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-        "inherits": "^2.0.3",
-        "string_decoder": "^1.1.1",
-        "util-deprecate": "^1.0.1"
-      },
-      "engines": {
-        "node": ">= 6"
-      }
-    },
     "node_modules/tar/node_modules/chownr": {
       "version": "3.0.0",
       "resolved": "https://registry.npmjs.org/chownr/-/chownr-3.0.0.tgz",
       "integrity": "sha512-+IxzY9BZOQd/XuYPRmrvEVjF/nqj5kgT4kEq7VofrDoM1MxoRjEWkrCC3EtLi59TVawxTAn+orJwFQcrqEN1+g==",
+      "dev": true,
       "engines": {
         "node": ">=18"
       }
@@ -11503,6 +11055,7 @@
       "version": "5.0.0",
       "resolved": "https://registry.npmjs.org/yallist/-/yallist-5.0.0.tgz",
       "integrity": "sha512-YgvUTfwqyc7UXVMrB+SImsVYSmTS8X/tSrtdNZMImM+n7+QTriRXyXim0mBrTXNeqzVF0KWGgHPeiyViFFrNDw==",
+      "dev": true,
       "engines": {
         "node": ">=18"
       }
@@ -11625,6 +11178,7 @@
       "version": "0.2.12",
       "resolved": "https://registry.npmjs.org/tinyglobby/-/tinyglobby-0.2.12.tgz",
       "integrity": "sha512-qkf4trmKSIiMTs/E63cxH+ojC2unam7rJ0WrauAzpT3ECNTxGRMlaXxVbfxMUC/w0LaYk6jQ4y/nGR9uBO3tww==",
+      "dev": true,
       "dependencies": {
         "fdir": "^6.4.3",
         "picomatch": "^4.0.2"
@@ -11640,6 +11194,7 @@
       "version": "6.4.3",
       "resolved": "https://registry.npmjs.org/fdir/-/fdir-6.4.3.tgz",
       "integrity": "sha512-PMXmW2y1hDDfTSRc9gaXIuCCRpuoz3Kaz8cUelp3smouvfT632ozg2vrT6lJsHKKOF59YLbOGfAWGUcKEfRMQw==",
+      "dev": true,
       "peerDependencies": {
         "picomatch": "^3 || ^4"
       },
@@ -11653,6 +11208,7 @@
       "version": "4.0.2",
       "resolved": "https://registry.npmjs.org/picomatch/-/picomatch-4.0.2.tgz",
       "integrity": "sha512-M7BAV6Rlcy5u+m6oPhAPFgJTzAioX/6B0DxyvDlo9l8+T3nLKbrczg2WLUyzd45L8RqfUMyGPzekbMvX2Ldkwg==",
+      "dev": true,
       "engines": {
         "node": ">=12"
       },
@@ -11711,11 +11267,6 @@
         "node": ">=6"
       }
     },
-    "node_modules/tr46": {
-      "version": "0.0.3",
-      "resolved": "https://registry.npmjs.org/tr46/-/tr46-0.0.3.tgz",
-      "integrity": "sha512-N3WMsuqV66lT30CrXNbEjx4GEwlow3v6rr4mCcv6prnfwhS01rkgyFdjPNBYd9br7LpXV1+Emh01fHnq2Gdgrw=="
-    },
     "node_modules/tree-dump": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/tree-dump/-/tree-dump-1.0.2.tgz",
@@ -11765,16 +11316,6 @@
       "resolved": "https://registry.npmjs.org/tty-browserify/-/tty-browserify-0.0.1.tgz",
       "integrity": "sha512-C3TaO7K81YvjCgQH9Q1S3R3P3BtN3RIM8n+OvX4il1K1zgE8ZhI0op7kClgkxtutIE8hQrcrHBXvIheqKUUCxw=="
     },
-    "node_modules/tunnel-agent": {
-      "version": "0.6.0",
-      "license": "Apache-2.0",
-      "dependencies": {
-        "safe-buffer": "^5.0.1"
-      },
-      "engines": {
-        "node": "*"
-      }
-    },
     "node_modules/type-fest": {
       "version": "4.38.0",
       "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-4.38.0.tgz",
@@ -11873,6 +11414,7 @@
     },
     "node_modules/universalify": {
       "version": "2.0.1",
+      "dev": true,
       "license": "MIT",
       "engines": {
         "node": ">= 10.0.0"
@@ -11891,6 +11433,8 @@
       "version": "0.12.3",
       "resolved": "https://registry.npmjs.org/unzipper/-/unzipper-0.12.3.tgz",
       "integrity": "sha512-PZ8hTS+AqcGxsaQntl3IRBw65QrBI6lxzqDEL7IAo/XCEqRTKGfOX56Vea5TH9SZczRVxuzk1re04z/YjuYCJA==",
+      "dev": true,
+      "license": "MIT",
       "dependencies": {
         "bluebird": "~3.7.2",
         "duplexer2": "~0.1.4",
@@ -12080,11 +11624,6 @@
         "minimalistic-assert": "^1.0.0"
       }
     },
-    "node_modules/webidl-conversions": {
-      "version": "3.0.1",
-      "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
-      "integrity": "sha512-2JAn3z8AR6rjK8Sm8orRC0h/bcl/DqL7tRPdGZ4I1CjdF+EaMLmYxBHyXuKL849eucPFhvBoxMsflfOb8kxaeQ=="
-    },
     "node_modules/webpack": {
       "version": "5.99.7",
       "resolved": "https://registry.npmjs.org/webpack/-/webpack-5.99.7.tgz",
@@ -12441,17 +11980,9 @@
         "node": ">=0.8.0"
       }
     },
-    "node_modules/whatwg-url": {
-      "version": "5.0.0",
-      "resolved": "https://registry.npmjs.org/whatwg-url/-/whatwg-url-5.0.0.tgz",
-      "integrity": "sha512-saE57nupxk6v3HY35+jzBwYa0rKSy0XR8JSxZPwgLr7ys0IBzhGviA1/TUGJLmSVqs8pb9AnvICXEuOHLprYTw==",
-      "dependencies": {
-        "tr46": "~0.0.3",
-        "webidl-conversions": "^3.0.0"
-      }
-    },
     "node_modules/which": {
       "version": "2.0.2",
+      "dev": true,
       "license": "ISC",
       "dependencies": {
         "isexe": "^2.0.0"
@@ -12489,25 +12020,10 @@
       "integrity": "sha512-CC1bOL87PIWSBhDcTrdeLo6eGT7mCFtrg0uIJtqJUFyK+eJnzl8A1niH56uu7KMa5XFrtiV+AQuHO3n7DsHnLQ==",
       "dev": true
     },
-    "node_modules/wrap-ansi": {
-      "version": "7.0.0",
-      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz",
-      "integrity": "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==",
-      "dependencies": {
-        "ansi-styles": "^4.0.0",
-        "string-width": "^4.1.0",
-        "strip-ansi": "^6.0.0"
-      },
-      "engines": {
-        "node": ">=10"
-      },
-      "funding": {
-        "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
-      }
-    },
     "node_modules/wrap-ansi-cjs": {
       "name": "wrap-ansi",
       "version": "7.0.0",
+      "dev": true,
       "license": "MIT",
       "dependencies": {
         "ansi-styles": "^4.0.0",
@@ -12521,10 +12037,6 @@
         "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
       }
     },
-    "node_modules/wrappy": {
-      "version": "1.0.2",
-      "license": "ISC"
-    },
     "node_modules/ws": {
       "version": "8.18.1",
       "resolved": "https://registry.npmjs.org/ws/-/ws-8.18.1.tgz",
@@ -12562,14 +12074,6 @@
         "node": ">=16"
       }
     },
-    "node_modules/y18n": {
-      "version": "5.0.8",
-      "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz",
-      "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==",
-      "engines": {
-        "node": ">=10"
-      }
-    },
     "node_modules/yallist": {
       "version": "3.1.1",
       "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz",
@@ -12583,31 +12087,6 @@
         "node": ">= 6"
       }
     },
-    "node_modules/yargs": {
-      "version": "16.2.0",
-      "resolved": "https://registry.npmjs.org/yargs/-/yargs-16.2.0.tgz",
-      "integrity": "sha512-D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw==",
-      "dependencies": {
-        "cliui": "^7.0.2",
-        "escalade": "^3.1.1",
-        "get-caller-file": "^2.0.5",
-        "require-directory": "^2.1.1",
-        "string-width": "^4.2.0",
-        "y18n": "^5.0.5",
-        "yargs-parser": "^20.2.2"
-      },
-      "engines": {
-        "node": ">=10"
-      }
-    },
-    "node_modules/yargs-parser": {
-      "version": "20.2.9",
-      "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.9.tgz",
-      "integrity": "sha512-y11nGElTIV+CT3Zv9t7VKl+Q3hTQoT9a1Qzezhhl6Rp21gJ/IVTW7Z3y9EWXhuUBC2Shnf+DX0antecpAwSP8w==",
-      "engines": {
-        "node": ">=10"
-      }
-    },
     "node_modules/yocto-queue": {
       "version": "0.1.0",
       "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz",
diff --git a/jbrowse/package.json b/jbrowse/package.json
index 3807eef04..b8823a270 100644
--- a/jbrowse/package.json
+++ b/jbrowse/package.json
@@ -6,25 +6,24 @@
     "setup": "npm ci",
     "build": "npm run build-dev",
     "start": "cross-env NODE_ENV=development webpack serve --config ./config/watch.config.js",
-    "build-no-pkg": "npm run clean && cross-env NODE_ENV=development webpack --config ./config/dev.config.js --progress --profile",
-    "build-dev": "npm run build-no-pkg",
+    "build-dev": "npm run clean && cross-env NODE_ENV=development webpack --config ./config/dev.config.js --progress --profile",
     "build-prod": "npm run clean && cross-env NODE_ENV=production PROD_SOURCE_MAP=source-map webpack --config ./config/prod.config.js --progress --profile",
     "clean": "rimraf resources/web/gen && rimraf resources/web/jbrowse/gen && rimraf resources/views/gen",
-    "prepareCli": "rimraf ./buildCli && rimraf ./resources/external/jb-cli && npm install @jbrowse/cli@1.7.4 --prefix ./buildCli",
-    "jb-pkg": "npm run prepareCli && npx pkg --outdir=./resources/external/jb-cli ./buildCli/node_modules/@jbrowse/cli && rimraf ./buildCli"
+    "jb-sea:fetch": "node ./resources/external/fetch-jbrowse-bundle.mjs",
+    "jb-sea:build": "node ./resources/external/build-sea.mjs ./resources/external/jbrowse.js",
+    "jb-sea": "npm run jb-sea:fetch && npm run jb-sea:build"
   },
   "dependencies": {
     "@gmod/vcf": "^6.0.9",
     "@jbrowse/core": "^3.2.0",
-    "@jbrowse/product-core": "^3.2.0",
     "@jbrowse/plugin-linear-genome-view": "^3.2.0",
     "@jbrowse/plugin-svg": "^3.2.0",
     "@jbrowse/plugin-variants": "^3.2.0",
+    "@jbrowse/product-core": "^3.2.0",
     "@jbrowse/react-linear-genome-view2": "^3.2.0",
     "@labkey/api": "^1.39.0",
     "@labkey/components": "^6.32.2",
     "@mui/x-data-grid": "^7.28.1",
-    "@yao-pkg/pkg": "^6.3.2",
     "assert": "^2.1.0",
     "browserify-zlib": "^0.2.0",
     "buffer": "^6.0.3",
@@ -54,6 +53,8 @@
     "@types/react": "^18.3.0",
     "@types/react-dom": "^18.3.0",
     "rimraf": "^6.0.1",
-    "typescript": "^5.1.6"
+    "tar": "^7.4.3",
+    "typescript": "^5.1.6",
+    "unzipper": "^0.12.3"
   }
 }
diff --git a/jbrowse/resources/external/build-sea.mjs b/jbrowse/resources/external/build-sea.mjs
new file mode 100644
index 000000000..baae7c2f2
--- /dev/null
+++ b/jbrowse/resources/external/build-sea.mjs
@@ -0,0 +1,193 @@
+// Build SEA for all platforms (win/linux/macos) from any host.
+// - Creates sea-prep.blob once from resources/external/jbrowse.js
+// - Downloads official Node runtimes for the same Node version as process.execPath
+// - Injects the blob into each runtime with postject
+// - Writes outputs to resources/external/jb-cli:
+//     cli-win.exe, cli-linux, cli-macos
+// - Cleans up temp files and resources/external/jbrowse.js at the end
+
+import { execFileSync, execSync } from 'node:child_process';
+import {
+  copyFileSync, chmodSync, existsSync, mkdirSync, rmSync, renameSync, writeFileSync
+} from 'node:fs';
+import { join, resolve } from 'node:path';
+import https from 'node:https';
+import { createWriteStream, createReadStream } from 'node:fs';
+import * as unzipper from 'unzipper';
+
+const ROOT = resolve('.');
+const OUTDIR = join(ROOT, 'resources', 'external', 'jb-cli');
+const TMPDIR = join(ROOT, '.sea-tmp');
+const INPUT_JS = join(ROOT, 'resources', 'external', 'jbrowse.js');
+
+const NODE_VERSION = process.versions.node;
+const DIST_BASE = process.env.NODE_DIST_URL || 'https://nodejs.org/dist';
+const TARGETS = [
+  ['win-x64',   'cli-win.exe', 'zip'],
+  ['linux-x64', 'cli-linux',   'tar.xz'],
+  ['darwin-x64','cli-macos',   'tar.xz'],
+  // ['darwin-arm64','cli-macos-arm64','tar.xz'],
+  // ['linux-arm64','cli-linux-arm64','tar.xz'],
+];
+
+const SENTINEL = 'NODE_SEA_FUSE_fce680ab2cc467b6e072b8b5df1996b2';
+const POSTJECT_PKG = 'postject@1.0.0-alpha.6';
+
+function log(s){ console.log(s); }
+function warn(s){ console.warn(s); }
+function fail(e){ console.error(e); process.exit(1); }
+
+function ensureDirs(){
+  mkdirSync(OUTDIR, { recursive: true });
+  mkdirSync(TMPDIR, { recursive: true });
+}
+
+function httpDownload(url, dest){
+  return new Promise((resolveP, rejectP)=>{
+    const file = createWriteStream(dest);
+    https.get(url, res=>{
+      if(res.statusCode && res.statusCode >= 300 && res.statusCode < 400 && res.headers.location){
+        httpDownload(res.headers.location, dest).then(resolveP, rejectP);
+        return;
+      }
+      if(res.statusCode !== 200){
+        rejectP(new Error(`Download failed ${res.statusCode}: ${url}`));
+        return;
+      }
+      res.pipe(file);
+      file.on('finish', ()=>file.close(()=>resolveP(void 0)));
+    }).on('error', err=>{ rejectP(err); });
+  });
+}
+
+function runOrThrow(cmd, args, opts={}){
+  execFileSync(cmd, args, { stdio: 'inherit', ...opts });
+}
+
+function shellOrThrow(command){
+  execSync(command, { stdio: 'inherit', shell: true });
+}
+
+// postject runner with fallbacks
+function runPostject(args){
+  const isWin = process.platform === 'win32';
+  const npxCmd = isWin ? 'npx.cmd' : 'npx';
+  const npmCmd = isWin ? 'npm.cmd' : 'npm';
+  try { runOrThrow(npxCmd, ['--yes', POSTJECT_PKG, ...args]); return; }
+  catch{ warn('[postject] npx failed, trying npm exec…'); }
+  try { runOrThrow(npmCmd, ['exec', '-y', POSTJECT_PKG, '--', ...args]); return; }
+  catch{ warn('[postject] npm exec failed, trying shell npx…'); }
+  try { shellOrThrow(`npx --yes ${POSTJECT_PKG} ${args.map(a=>`"${a}"`).join(' ')}`); return; }
+  catch{ warn('[postject] shell npx failed, trying shell npm exec…'); }
+  shellOrThrow(`npm exec -y ${POSTJECT_PKG} -- ${args.map(a=>`"${a}"`).join(' ')}`);
+}
+
+async function extractZip(zipPath, outDir){
+  if (process.platform === 'win32') {
+    try {
+      shellOrThrow(`powershell -NoProfile -Command "Expand-Archive -Force '${zipPath.replace(/'/g, "''")}' '${outDir.replace(/'/g, "''")}'"`);
+      return;
+    } catch (e) {
+      // Fall through to unzipper if PowerShell isn’t present or fails
+    }
+  } else {
+    // POSIX: try `unzip` if present
+    try {
+      shellOrThrow(`unzip -o "${zipPath}" -d "${outDir}"`);
+      return;
+    } catch (e) {
+      // Fall through to unzipper
+    }
+  }
+
+  await new Promise((resolveP, rejectP) => {
+    const stream = createReadStream(zipPath)
+      .pipe(unzipper.Extract({ path: outDir }));
+
+    stream.on('close', resolveP);
+    stream.on('error', rejectP);
+  });
+}
+
+// extract only bin/node from tar.xz to avoid symlink issues on Windows
+function extractNodeFromTarXz(tarxzPath, outDir, target) {
+  const innerPath = `node-v${NODE_VERSION}-${target}/bin/node`;
+  try { shellOrThrow(`tar -xJf "${tarxzPath}" -C "${outDir}" "${innerPath}"`); }
+  catch { shellOrThrow(`bsdtar -xf "${tarxzPath}" -C "${outDir}" "${innerPath}"`); }
+  return join(outDir, innerPath);
+}
+
+function nodeBinaryPathFromExtract(dir, target){
+  const base = `node-v${NODE_VERSION}-${target}`;
+  if (target.startsWith('win')) return join(dir, base, 'node.exe');
+  return join(dir, base, 'bin', 'node');
+}
+
+function injectForTarget(target, outName, archiveExt, blobPath){
+  const distUrl = `${DIST_BASE}/v${NODE_VERSION}/node-v${NODE_VERSION}-${target}.${archiveExt}`;
+  const dlPath = join(TMPDIR, `node-${target}.${archiveExt}`);
+
+  log(`\n=== Target ${target} ===`);
+  log(`Downloading: ${distUrl}`);
+  return httpDownload(distUrl, dlPath).then(async ()=>{
+    log('Extracting…');
+    let nodePath;
+    if (archiveExt === 'zip') {
+      await extractZip(dlPath, TMPDIR);
+      nodePath = nodeBinaryPathFromExtract(TMPDIR, target);
+    } else {
+      nodePath = extractNodeFromTarXz(dlPath, TMPDIR, target);
+    }
+    if (!existsSync(nodePath)) fail(`node binary not found in ${nodePath}`);
+
+    const workExe = join(TMPDIR, `work-${outName}`);
+    copyFileSync(nodePath, workExe);
+
+    const postjectArgs = target.startsWith('darwin')
+      ? [workExe, 'NODE_SEA_BLOB', blobPath, '--sentinel-fuse', SENTINEL, '--macho-segment-name', 'NODE_SEA']
+      : [workExe, 'NODE_SEA_BLOB', blobPath, '--sentinel-fuse', SENTINEL];
+
+    log('Injecting SEA blob…');
+    runPostject(postjectArgs);
+
+    if (!target.startsWith('win')) chmodSync(workExe, 0o755);
+
+    const finalPath = join(OUTDIR, outName);
+    if (existsSync(finalPath)) rmSync(finalPath, { force: true });
+    renameSync(workExe, finalPath);
+
+    rmSync(dlPath, { force: true });
+    try { rmSync(join(TMPDIR, `node-v${NODE_VERSION}-${target}`), { recursive: true, force: true }); } catch {}
+    log(`Wrote ${finalPath}`);
+  });
+}
+
+function buildBlobOnce(){
+  const cfgPath = join(TMPDIR, 'sea-config.json');
+  const blobPath = join(TMPDIR, 'sea-prep.blob');
+  log('Creating SEA blob…');
+  const cfg = { main: INPUT_JS, output: blobPath, disableExperimentalSEAWarning: true };
+  writeFileSync(cfgPath, JSON.stringify(cfg, null, 2));
+  runOrThrow(process.execPath, ['--experimental-sea-config', cfgPath]);
+  return blobPath;
+}
+
+async function main(){
+  ensureDirs();
+  if (!existsSync(INPUT_JS)) fail(`Missing ${INPUT_JS}. Run your fetch step first.`);
+  rmSync(TMPDIR, { recursive: true, force: true });
+  mkdirSync(TMPDIR, { recursive: true });
+
+  const blob = buildBlobOnce();
+
+  for (const [target, outName, ext] of TARGETS) {
+    await injectForTarget(target, outName, ext, blob);
+  }
+
+  try { rmSync(TMPDIR, { recursive: true, force: true }); } catch {}
+  try { if (existsSync(INPUT_JS)) rmSync(INPUT_JS, { force: true }); } catch {}
+
+  log('\nAll targets built.');
+}
+
+main().catch(fail);
diff --git a/jbrowse/resources/external/fetch-jbrowse-bundle.mjs b/jbrowse/resources/external/fetch-jbrowse-bundle.mjs
new file mode 100644
index 000000000..04623fe0b
--- /dev/null
+++ b/jbrowse/resources/external/fetch-jbrowse-bundle.mjs
@@ -0,0 +1,57 @@
+import { execSync } from 'node:child_process';
+import { existsSync, mkdirSync, copyFileSync, rmSync } from 'node:fs';
+import { join, resolve } from 'node:path';
+
+const ROOT = resolve('.');
+const BUILD = join(ROOT, 'buildCli');
+const OUTDIR = join(ROOT, 'resources', 'external');
+const OUTFILE = join(OUTDIR, 'jbrowse.js');
+
+async function extractTgz(tgzPath, cwd) {
+  try {
+    const mod = await import('tar').catch(() => null);
+    const tar = mod?.default ?? mod;
+    if (tar?.x) {
+      await tar.x({ file: tgzPath, cwd });
+      return;
+    }
+  } catch {
+  }
+  execSync(`tar -xzf "${tgzPath}" -C "${cwd}"`, { stdio: 'inherit', shell: true });
+}
+
+async function main() {
+  if (existsSync(BUILD)) rmSync(BUILD, { recursive: true, force: true });
+  mkdirSync(BUILD, { recursive: true });
+  mkdirSync(OUTDIR, { recursive: true });
+
+  console.log('Packing @jbrowse/cli (latest)…');
+  const out = execSync('npm pack @jbrowse/cli', {
+    cwd: BUILD,
+    stdio: ['ignore', 'pipe', 'inherit'],
+    shell: true,
+  })
+    .toString()
+    .trim();
+
+  const tgz = join(BUILD, out);
+  console.log(`Downloaded: ${tgz}`);
+
+  console.log('Extracting tarball…');
+  await extractTgz(tgz, BUILD);
+
+  const bundled = join(BUILD, 'package', 'bundle', 'index.js');
+  if (!existsSync(bundled)) {
+    throw new Error(`bundle/index.js not found at ${bundled}`);
+  }
+
+  copyFileSync(bundled, OUTFILE);
+  console.log(`Copied bundle to ${OUTFILE}`);
+
+  rmSync(BUILD, { recursive: true, force: true });
+}
+
+main().catch(err => {
+  console.error(err);
+  process.exit(1);
+});
diff --git a/jbrowse/src/org/labkey/jbrowse/JBrowseManager.java b/jbrowse/src/org/labkey/jbrowse/JBrowseManager.java
index c1039d844..1db0ab1d3 100644
--- a/jbrowse/src/org/labkey/jbrowse/JBrowseManager.java
+++ b/jbrowse/src/org/labkey/jbrowse/JBrowseManager.java
@@ -239,7 +239,7 @@ public void testJBrowseCli() throws Exception
             SimpleScriptWrapper wrapper = new SimpleScriptWrapper(_log);
             wrapper.setThrowNonZeroExits(false);
 
-            String output = wrapper.executeWithOutput(Arrays.asList(exe.getPath(), "help"));
+            String output = wrapper.executeWithOutput(Arrays.asList(exe.getPath(), "--help"));
             if (wrapper.getLastReturnCode() != 0)
             {
                 _log.error("Non-zero exit from testJBrowseCli: " + wrapper.getLastReturnCode());