@@ -29,12 +29,13 @@ A sortable version of the table is available
2929| [ Fiedler_BMCSystBiol2016] ( Benchmark-Models/Fiedler_BMCSystBiol2016/ ) | 3 | 22 | 0 | | 0 | 0 | 72 | 2 | normal | | 6 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1186/s12918-016-0319-7 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Fiedler_BMCSystBiol2016/model_Fiedler_BMCSystBiol2016.xml ) |
3030| [ Froehlich_CellSystems2018] ( Benchmark-Models/Froehlich_CellSystems2018/ ) | 9169 | 4231 | 0 | | 0 | 9169 | 9169 | 1 | normal | | 1396 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1016/j.cels.2018.10.013 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Froehlich_CellSystems2018/model_Froehlich_CellSystems2018.xml ) |
3131| [ Fujita_SciSignal2010] ( Benchmark-Models/Fujita_SciSignal2010/ ) | 6 | 19 | 0 | ✓ | 0 | 0 | 144 | 3 | normal | | 9 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1126/scisignal.2000810 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Fujita_SciSignal2010/model_Fujita_SciSignal2010.xml ) |
32- | [ Giordano_Nature2020] ( Benchmark-Models/Giordano_Nature2020/ ) | 1 | 50 | 0 | ✓ | 0 | 0 | 313 | 7 | normal | | 13 | [ \[ 1\] ] ( http://identifiers.org/pubmed/32322102 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Giordano_Nature2020/Giordano_Nature2020_model .xml ) |
32+ | [ Giordano_Nature2020] ( Benchmark-Models/Giordano_Nature2020/ ) | 1 | 50 | 0 | ✓ | 0 | 0 | 313 | 7 | normal | | 13 | [ \[ 1\] ] ( http://identifiers.org/pubmed/32322102 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Giordano_Nature2020/model_Giordano_Nature2020 .xml ) |
3333| [ Isensee_JCB2018] ( Benchmark-Models/Isensee_JCB2018/ ) | 123 | 46 | 0 | ✓ | 1 | 0 | 687 | 3 | normal | parameterScaleNormal | 25 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1083/jcb.201708053 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Isensee_JCB2018/model_Isensee_JCB2018.xml ) |
3434| [ Lang_PLOSComputBiol2024] ( Benchmark-Models/Lang_PLOSComputBiol2024/ ) | 1 | 294 | 0 | | 0 | 0 | 9600 | 16 | normal | laplace; uniform | 124 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1371/journal.pcbi.1011151 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Lang_PLOSComputBiol2024/model_Lang_PLOSComputBiol2024.xml ) |
3535| [ Laske_PLOSComputBiol2019] ( Benchmark-Models/Laske_PLOSComputBiol2019/ ) | 3 | 13 | 0 | | 0 | 0 | 42 | 13 | normal; log-normal | | 41 | [ \[ 1\] ] ( http://identifiers.org/biomodels.db/BIOMD0000000463 ) [ \[ 2\] ] ( http://identifiers.org/biomodels.db/MODEL1307270000 ) [ \[ 3\] ] ( http://identifiers.org/doi/10.1371/journal.pcbi.1006944 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Laske_PLOSComputBiol2019/model_Laske_PLOSComputBiol2019.xml ) |
36+ | [ Liu_IFACPapersOnLine2025] ( Benchmark-Models/Liu_IFACPapersOnLine2025/ ) | 2 | 9 | 1 | ✓ | 0 | 0 | 100 | 1 | normal | | 0 | | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Liu_IFACPapersOnLine2025/model.xml ) |
3637| [ Lucarelli_CellSystems2018] ( Benchmark-Models/Lucarelli_CellSystems2018/ ) | 16 | 84 | 0 | | 0 | 0 | 1755 | 65 | normal; log10-normal | | 33 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1016/j.cels.2017.11.010 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Lucarelli_CellSystems2018/model_Lucarelli_CellSystems2018.xml ) |
37- | [ Okuonghae_ChaosSolitonsFractals2020] ( Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/ ) | 1 | 16 | 0 | | 0 | 0 | 92 | 2 | normal | | 9 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1016/j.chaos.2020.110032 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/Okuonghae_ChaosSolitonsFractals2020_model .xml ) |
38+ | [ Okuonghae_ChaosSolitonsFractals2020] ( Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/ ) | 1 | 16 | 0 | | 0 | 0 | 92 | 2 | normal | | 9 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1016/j.chaos.2020.110032 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/model_Okuonghae_ChaosSolitonsFractals2020 .xml ) |
3839| [ Oliveira_NatCommun2021] ( Benchmark-Models/Oliveira_NatCommun2021/ ) | 1 | 12 | 0 | ✓ | 0 | 0 | 120 | 2 | normal | | 9 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1038/s41467-020-19798-3 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Oliveira_NatCommun2021/Oliveira_NatCommun2021_model.xml ) |
3940| [ Perelson_Science1996] ( Benchmark-Models/Perelson_Science1996/ ) | 1 | 3 | 0 | | 0 | 0 | 16 | 1 | log10-normal | | 4 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1126/science.271.5255.1582 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Perelson_Science1996/model_Perelson_Science1996.xml ) |
4041| [ Rahman_MBS2016] ( Benchmark-Models/Rahman_MBS2016/ ) | 1 | 9 | 0 | | 0 | 0 | 23 | 1 | normal | | 7 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1016/j.mbs.2016.07.009 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Rahman_MBS2016/model_Rahman_MBS2016.xml ) |
@@ -45,8 +46,8 @@ A sortable version of the table is available
4546| [ Smith_BMCSystBiol2013] ( Benchmark-Models/Smith_BMCSystBiol2013/ ) | 35 | 25 | 3 | ✓ | 0 | 0 | 62 | 9 | normal | | 133 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1186/1752-0509-7-41 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Smith_BMCSystBiol2013/model_Smith_BMCSystBiol2013.xml ) |
4647| [ Sneyd_PNAS2002] ( Benchmark-Models/Sneyd_PNAS2002/ ) | 9 | 15 | 0 | | 0 | 0 | 135 | 1 | normal | | 6 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1073/pnas.032281999 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Sneyd_PNAS2002/model_Sneyd_PNAS2002.xml ) |
4748| [ Weber_BMC2015] ( Benchmark-Models/Weber_BMC2015/ ) | 2 | 36 | 0 | ✓ | 1 | 0 | 135 | 8 | normal | | 7 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1186/s12918-015-0147-1 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Weber_BMC2015/model_Weber_BMC2015.xml ) |
48- | [ Zhao_QuantBiol2020] ( Benchmark-Models/Zhao_QuantBiol2020/ ) | 7 | 28 | 0 | | 0 | 0 | 82 | 1 | normal | | 5 | [ \[ 1\] ] ( http://identifiers.org/pubmed/32219006 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Zhao_QuantBiol2020/SBML_Zhao_QuantBiol2020 .xml ) |
49- | [ Zheng_PNAS2012] ( Benchmark-Models/Zheng_PNAS2012/ ) | 1 | 46 | 0 | | 1 | 0 | 60 | 15 | normal | | 15 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1073/pnas.1201240109 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Zheng_PNAS2012/model_Zheng_PNAS2012.xml ) |
49+ | [ Zhao_QuantBiol2020] ( Benchmark-Models/Zhao_QuantBiol2020/ ) | 7 | 28 | 0 | | 0 | 0 | 82 | 1 | normal | | 5 | [ \[ 1\] ] ( http://identifiers.org/pubmed/32219006 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Zhao_QuantBiol2020/model_Zhao_QuantBiol2020 .xml ) |
50+ | [ Zheng_PNAS2012] ( Benchmark-Models/Zheng_PNAS2012/ ) | 1 | 46 | 0 | | 1 | 0 | 60 | 15 | normal | | 15 | [ \[ 1\] ] ( http://identifiers.org/doi/10.1073/pnas.1205707109 ) | [ \[ 1\] ] ( https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Zheng_PNAS2012/model_Zheng_PNAS2012.xml ) |
5051<!-- END OVERVIEW TABLE -->
5152
5253## License
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