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m-philippsm-philipps
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rename files, add visualization spec
1 parent a4d97f4 commit 53334ce

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Lines changed: 108 additions & 107 deletions

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Benchmark-Models/Liu_IFACPapersOnLine2025/age_of_infection_model.yaml renamed to Benchmark-Models/Liu_IFACPapersOnLine2025/Liu_IFAC-PapersOnLine2025.yaml

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@@ -4,10 +4,10 @@ problems:
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- condition_files:
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- conditions.tsv
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measurement_files:
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- measurements_scaled.tsv
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- measurements.tsv
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observable_files:
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- observables.tsv
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sbml_files:
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- age_of_infection_model.xml
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- model.xml
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visualization_files:
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- visualizations.tsv
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- visualization.tsv

‎Benchmark-Models/Liu_IFACPapersOnLine2025/measurements.tsv‎

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observableId simulationConditionId measurement time datasetId
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tumor_num vvDD 451.73401707247393 0 virus
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tumor_num vvDD 477.41006706423315 0 virus
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tumor_num vvDD 509.5051295539299 0 virus
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tumor_num vvDD 554.4382170395085 0 virus
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tumor_num vvDD 852.9222981937005 0 virus
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tumor_num vvDD 1016.607116891161 0 virus
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tumor_num vvDD 1058.3306981277697 0 virus
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tumor_num vvDD 1084.006748119529 0 virus
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tumor_num vvDD 1241.2725543190497 0 virus
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tumor_num vvDD 1263.7390980618388 0 virus
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tumor_num vvDD 679.6089607493324 1 virus
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tumor_num vvDD 817.6177294550338 1 virus
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tumor_num vvDD 535.1811795456891 1 virus
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tumor_num vvDD 824.0367419529714 1 virus
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tumor_num vvDD 1055.1211918788 1 virus
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tumor_num vvDD 926.740941920006 1 virus
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tumor_num vvDD 1571.8516979629405 1 virus
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tumor_num vvDD 1331.1387292902025 1 virus
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tumor_num vvDD 1481.9855229917855 1 virus
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tumor_num vvDD 968.4645231566146 1 virus
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tumor_num vvDD 406.80092958689744 2 virus
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tumor_num vvDD 483.82907956217286 2 virus
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tumor_num vvDD 294.4682108729532 2 virus
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tumor_num vvDD 885.0173606833995 2 virus
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tumor_num vvDD 291.25870462398325 2 virus
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tumor_num vvDD 814.4082232060639 2 virus
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tumor_num vvDD 958.836004409705 2 virus
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tumor_num vvDD 1119.3113168581956 2 virus
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tumor_num vvDD 1132.1493418540751 2 virus
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tumor_num vvDD 1000.5595856463136 2 virus
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tumor_num vvDD 355.4488296033791 3 virus
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tumor_num vvDD 349.0298171054393 3 virus
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tumor_num vvDD 220.64956714664766 3 virus
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tumor_num vvDD 194.97351715488847 3 virus
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tumor_num vvDD 252.74462963634662 3 virus
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tumor_num vvDD 422.84846083174693 3 virus
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tumor_num vvDD 772.6846419694551 3 virus
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tumor_num vvDD 464.5720420683534 3 virus
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tumor_num vvDD 785.5226669653348 3 virus
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tumor_num vvDD 339.40129835853173 3 virus
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tumor_num vvDD 50.545735951247316 4 virus
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tumor_num vvDD 101.89783593476568 4 virus
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tumor_num vvDD 76.2217859430065 4 virus
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tumor_num vvDD 53.75524220021722 4 virus
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tumor_num vvDD 191.76401090591855 4 virus
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tumor_num vvDD 262.3731483832563 4 virus
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tumor_num vvDD 589.7427857781752 4 virus
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tumor_num vvDD 345.8203108564694 4 virus
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tumor_num vvDD 631.4663670147839 4 virus
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tumor_num vvDD 374.7058670971985 4 virus
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tumor_num ctrl 349.1039275702164 0 control
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tumor_num ctrl 370.50979635893606 0 control
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tumor_num ctrl 407.93829872021803 0 control
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tumor_num ctrl 552.3499369974998 0 control
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tumor_num ctrl 632.5786249293225 0 control
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tumor_num ctrl 657.550182543784 0 control
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tumor_num ctrl 945.4762838668787 0 control
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tumor_num ctrl 985.5848518293386 0 control
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tumor_num ctrl 1244.9967188123485 0 control
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tumor_num ctrl 1343.9454339282627 0 control
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tumor_num ctrl 508.3483427091911 1 control
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tumor_num ctrl 323.8108084590962 1 control
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tumor_num ctrl 516.3654354989194 1 control
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tumor_num ctrl 917.5146511614834 1 control
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tumor_num ctrl 965.6460879171242 1 control
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tumor_num ctrl 830.874501593137 1 control
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tumor_num ctrl 1345.400986797869 1 control
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tumor_num ctrl 1404.2411339513233 1 control
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tumor_num ctrl 1086.00067182176 1 control
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tumor_num ctrl 1372.138106771691 1 control
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tumor_num ctrl 648.8611786571674 2 control
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tumor_num ctrl 343.986388512792 2 control
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tumor_num ctrl 480.36360598998806 2 control
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tumor_num ctrl 1250.5821141492872 2 control
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tumor_num ctrl 1140.9304646390121 2 control
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tumor_num ctrl 771.4696645965797 2 control
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tumor_num ctrl 1400.3481076254745 2 control
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tumor_num ctrl 1357.553698058382 2 control
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tumor_num ctrl 1400.3423316220221 2 control
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tumor_num ctrl 1592.8854066549445 2 control
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tumor_num ctrl 612.8651251516885 3 control
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tumor_num ctrl 441.73369491093814 3 control
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tumor_num ctrl 449.7392356937657 3 control
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tumor_num ctrl 1091.5802911552485 3 control
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tumor_num ctrl 1265.4091150075299 3 control
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tumor_num ctrl 959.3493729329441 3 control
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tumor_num ctrl 1669.2210682609186 3 control
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tumor_num ctrl 1441.9064524540886 3 control
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tumor_num ctrl 1262.7232734028994 3 control
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tumor_num ctrl 1749.461308199642 3 control
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tumor_num ctrl 705.2811803647304 4 control
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tumor_num ctrl 416.469455817074 4 control
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tumor_num ctrl 496.70391975234486 4 control
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tumor_num ctrl 1499.550966893223 4 control
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tumor_num ctrl 1357.8136182136711 4 control
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tumor_num ctrl 1026.0423760760882 4 control
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tumor_num ctrl 1531.6539940728533 4 control
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tumor_num ctrl 1700.1226867227788 4 control
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tumor_num ctrl 1470.1280053147707 4 control
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tumor_num ctrl 1876.6258001727879 4 control

‎Benchmark-Models/Liu_IFACPapersOnLine2025/measurements_scaled.tsv‎

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Benchmark-Models/Liu_IFACPapersOnLine2025/age_of_infection_model.xml renamed to Benchmark-Models/Liu_IFACPapersOnLine2025/model.xml

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<?xml version="1.0" encoding="UTF-8"?>
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<sbml xmlns="http://www.sbml.org/sbml/level3/version2/core" level="3" version="2">
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<model metaid="age_of_infection_model" id="age_of_infection_model">
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<model metaid="Liu_IFACPapersOnLine2025" id="Liu_IFACPapersOnLine2025">
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<listOfParameters>
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<parameter id="U" constant="false"/>
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<parameter id="rho" value="0.01" constant="true"/>

‎Benchmark-Models/Liu_IFACPapersOnLine2025/visualization.tsv‎

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plotId plotTypeData plotTypeSimulation xValues xLabel yValues yLabel datasetId legendEntry
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plot1 MeanAndSD ScatterPlot time Time [Days] tumor_num Tumor [#] control Control
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plot1 MeanAndSD ScatterPlot time Time [Days] tumor_num Tumor [#] virus OncVirus

‎Benchmark-Models/Liu_IFACPapersOnLine2025/visualizations.tsv‎

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