http://geneontology.org/gene-associations/gene_association.goa_uniprot_noiea.gz
Run the script with both old and new files, errors occur telling
Can't execute: Duplicate entry 'UniProtKB-P04637-GO:0005737-IDA-PMID:16131611-' for key 'PRIMARY'
DBD::mysql::st execute failed: Duplicate entry 'UniProtKB-P04637-GO:0005737-IDA-PMID:16131611-' for key 'PRIMARY' at perl/yogy_add_go_assocs.pl line 94, <GO_TERMS> line 154471.
One example in gene_association.dictyBase:
dictyBase DDB_G0268004 snrp70 GO:0005685 GO_REF:0000024 ISS UniProtKB:Q00916 C U1 small nuclear ribonucleoprotein 70 kDa protein gene taxon:44689 20060120 dictyBase
dictyBase DDB_G0268004 snrp70 GO:0005685 GO_REF:0000024 ISS UniProtKB:P08621 C U1 small nuclear ribonucleoprotein 70 kDa protein gene taxon:44689 20131213 UniProt
Aparently these two entries are identical, except the last two columns, which are not used as the primary keys in SQL insert. So I guess the best will be remove the duplicated rows. Please let me know if you have some other concerns.
http://geneontology.org/gene-associations/gene_association.goa_uniprot_noiea.gz
Run the script with both old and new files, errors occur telling
One example in gene_association.dictyBase:
Aparently these two entries are identical, except the last two columns, which are not used as the primary keys in SQL insert. So I guess the best will be remove the duplicated rows. Please let me know if you have some other concerns.