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vfdbQuery

Requirements

  • Python 3.6
  • ncbi-blast+ (makeblastdb and blastn must be in your $PATH)

Installation

pip install vfdbQuery

Usage

Usage: vfdbQuery [OPTIONS]

  vfdbQuery is a simple script for querying an input genome assembly against
  the Virulence Factor Database (VFDB).

Options:
  -i, --infile PATH     FASTA file that you want to search against VFDB
                        [required]
  -db, --database PATH  Path to Virulence Factor Database (VFDB)  [required]
  --help                Show this message and exit.