DJ_cloud/entrypoint.sh at main · ArsenyFinkelsteinLab/DJ_cloud · GitHub

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#!/bin/bash

cd ~

# # copy in the .env file - this file is manually created and placed in this EC2 instance
# echo "----- Copy .env file -----"
# cp .FinkelsteinLab.env ArsenyLabWorkflow/docker/standard_worker/.env

# build and start the container
cd ArsenyLabWorkflow/docker/standard_worker/dist/debian

echo "----- Build Docker image -----"
docker compose --env-file=../../.env  -f docker-compose-standard_worker.yaml build --no-cache

echo "----- Start the Docker container -----"
docker compose --env-file=../../.env  -f docker-compose-standard_worker.yaml up
echo "----- Processing finished -----"
sleep 20

echo "----- Cleanup Docker -----"
docker compose --env-file=../../.env  -f docker-compose-standard_worker.yaml down
docker system prune -a -f --volumes


echo "----- Shutdown server -----"
sudo shutdown now