When assignation new clusters into existing clusters into our Seurat object. The new clusters keep the old level from the original clusters.
Exemple : Original Cluster 28 is exploded into four new clusters (Cluster 41, 42, 43, 44). These four new clusters will keep the level as 28. When plotting results, Seurat loves to plot using the levels, and not so the character string associated with that cluster, when using any parameter with "seurat_clusters", which we are creating with SingleCell::analyzed_integrated.
When assignation new clusters into existing clusters into our Seurat object. The new clusters keep the old level from the original clusters.
Exemple : Original Cluster 28 is exploded into four new clusters (Cluster 41, 42, 43, 44). These four new clusters will keep the level as 28. When plotting results, Seurat loves to plot using the levels, and not so the character string associated with that cluster, when using any parameter with "seurat_clusters", which we are creating with SingleCell::analyzed_integrated.