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SeqMerger

Requeriments

  • Bio::SeqIO
  • File::Basename

Usage

perl BioSeqMerger.pl file1.fasta file2.fasta .. > output.fasta

Description

SeqMerger is designed to concatenate sequences from multiple aligned FASTA files.

Key functionalities include:

  • Sequence Concatenation
  • Position Tracking
  • Summary Report

This script is an essential asset for researchers and professionals in the field, streamlining the process of managing and analyzing large genomic datasets.

Input File Guide

To ensure the smooth operation of the script, your input files should adhere to the following format and guidelines:

File Format: The input files should be in FASTA format, a single-line description (preceded by a '>') followed by lines of sequence data.

Sequence ID: Each sequence within the files should have a unique identifier, which is specified in the description line (the line starting with '>'). The script uses these IDs to concatenate sequences across files.

Sequence Length: All sequences within each fasta aligned file should have the same length. This is to ensure that the concatenation process, which is based on sequence positions, functions correctly.