From c98828cdc26762cc536c4b34d76e0861579de6a9 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 26 Apr 2024 18:44:37 +0000 Subject: [PATCH] Bump the pip group across 7 directories with 8 updates Bumps the pip group with 5 updates in the /src/modules/api/pipeline-task directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [gunicorn](https://github.com/benoitc/gunicorn) | `20.1.0` | `22.0.0` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.3` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `2.3.8` | Bumps the pip group with 4 updates in the /src/modules/db_operations directory: [flask](https://github.com/pallets/flask), [sentry-sdk](https://github.com/getsentry/sentry-python), [jinja2](https://github.com/pallets/jinja) and [werkzeug](https://github.com/pallets/werkzeug). Bumps the pip group with 2 updates in the /src/modules/indel_primer directory: [sentry-sdk](https://github.com/getsentry/sentry-python) and [jinja2](https://github.com/pallets/jinja). Bumps the pip group with 3 updates in the /src/modules/maintenance directory: [flask](https://github.com/pallets/flask), [jinja2](https://github.com/pallets/jinja) and [werkzeug](https://github.com/pallets/werkzeug). Bumps the pip group with 6 updates in the /src/modules/site directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.3` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `2.3.8` | | [httplib2](https://github.com/httplib2/httplib2) | `0.18.0` | `0.19.0` | | [pyarrow](https://github.com/apache/arrow) | `0.17.1` | `14.0.1` | Bumps the pip group with 6 updates in the /src/modules/site-v2 directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.3` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `2.3.8` | | [httplib2](https://github.com/httplib2/httplib2) | `0.18.0` | `0.19.0` | | [pyarrow](https://github.com/apache/arrow) | `0.17.1` | `14.0.1` | Bumps the pip group with 5 updates in the /src/pkg/caendr directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.3` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `2.3.8` | | [numpy](https://github.com/numpy/numpy) | `1.19.5` | `1.22.0` | Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/flask/compare/1.1.2...2.2.5) Updates `gunicorn` from 20.1.0 to 22.0.0 - [Release notes](https://github.com/benoitc/gunicorn/releases) - [Commits](https://github.com/benoitc/gunicorn/compare/20.1.0...22.0.0) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/getsentry/sentry-python/compare/1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.3 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.0.3...3.1.3) Updates `werkzeug` from 1.0.0 to 2.3.8 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/werkzeug/compare/1.0.0...2.3.8) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/flask/compare/1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/getsentry/sentry-python/compare/1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.3 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.0.3...3.1.3) Updates `werkzeug` from 1.0.0 to 2.3.8 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/werkzeug/compare/1.0.0...2.3.8) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/getsentry/sentry-python/compare/1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.3 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.0.3...3.1.3) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/flask/compare/1.1.2...2.2.5) Updates `jinja2` from 3.0.3 to 3.1.3 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.0.3...3.1.3) Updates `werkzeug` from 1.0.0 to 2.3.8 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/werkzeug/compare/1.0.0...2.3.8) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/flask/compare/1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/getsentry/sentry-python/compare/1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.3 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.0.3...3.1.3) Updates `werkzeug` from 1.0.0 to 2.3.8 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/werkzeug/compare/1.0.0...2.3.8) Updates `httplib2` from 0.18.0 to 0.19.0 - [Changelog](https://github.com/httplib2/httplib2/blob/master/CHANGELOG) - [Commits](https://github.com/httplib2/httplib2/compare/v0.18.0...v0.19.0) Updates `pyarrow` from 0.17.1 to 14.0.1 - [Commits](https://github.com/apache/arrow/compare/apache-arrow-0.17.1...go/v14.0.1) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/flask/compare/1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/getsentry/sentry-python/compare/1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.3 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.0.3...3.1.3) Updates `werkzeug` from 1.0.0 to 2.3.8 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/werkzeug/compare/1.0.0...2.3.8) Updates `httplib2` from 0.18.0 to 0.19.0 - [Changelog](https://github.com/httplib2/httplib2/blob/master/CHANGELOG) - [Commits](https://github.com/httplib2/httplib2/compare/v0.18.0...v0.19.0) Updates `pyarrow` from 0.17.1 to 14.0.1 - [Commits](https://github.com/apache/arrow/compare/apache-arrow-0.17.1...go/v14.0.1) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/flask/compare/1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/getsentry/sentry-python/compare/1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.3 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.0.3...3.1.3) Updates `werkzeug` from 1.0.0 to 2.3.8 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/werkzeug/compare/1.0.0...2.3.8) Updates `numpy` from 1.19.5 to 1.22.0 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v1.19.5...v1.22.0) --- updated-dependencies: - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: gunicorn dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: httplib2 dependency-type: direct:production dependency-group: pip - dependency-name: pyarrow dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: httplib2 dependency-type: direct:production dependency-group: pip - dependency-name: pyarrow dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:development dependency-group: pip - dependency-name: jinja2 dependency-type: direct:development dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: numpy dependency-type: direct:production dependency-group: pip ... Signed-off-by: dependabot[bot] --- src/modules/api/pipeline-task/requirements.txt | 10 +++++----- src/modules/db_operations/requirements.txt | 8 ++++---- src/modules/indel_primer/requirements.txt | 4 ++-- src/modules/maintenance/requirements.txt | 6 +++--- src/modules/site-v2/requirements.txt | 12 ++++++------ src/modules/site/requirements.txt | 12 ++++++------ src/pkg/caendr/requirements.dev.txt | 8 ++++---- src/pkg/caendr/setup.py | 6 +++--- 8 files changed, 33 insertions(+), 33 deletions(-) mode change 100755 => 100644 src/modules/api/pipeline-task/requirements.txt mode change 100755 => 100644 src/modules/site-v2/requirements.txt mode change 100755 => 100644 src/modules/site/requirements.txt diff --git a/src/modules/api/pipeline-task/requirements.txt b/src/modules/api/pipeline-task/requirements.txt old mode 100755 new mode 100644 index cda00515a..265e30fa2 --- a/src/modules/api/pipeline-task/requirements.txt +++ b/src/modules/api/pipeline-task/requirements.txt @@ -1,16 +1,16 @@ -Flask==1.1.2 +Flask==2.2.5 backoff==2.2.1 gcloud==0.18.3 google_cloud_secret_manager==2.7.2 google-api-python-client>=2.35.0 google-cloud-datastore==2.2.0 google-cloud-run -gunicorn==20.1.0 +gunicorn==22.0.0 python-dotenv==0.19.1 -sentry-sdk==1.7.2 +sentry-sdk==1.14.0 itsdangerous==2.0.1 pyOpenSSL==22.1.0 -Jinja2==3.0.3 -Werkzeug==1.0.0 +Jinja2==3.1.3 +Werkzeug==2.3.8 Flask_SQLAlchemy==2.5.1 SQLAlchemy==1.3.18 diff --git a/src/modules/db_operations/requirements.txt b/src/modules/db_operations/requirements.txt index a6d363ce4..7a81efabf 100644 --- a/src/modules/db_operations/requirements.txt +++ b/src/modules/db_operations/requirements.txt @@ -1,14 +1,14 @@ backoff==2.2.1 -Flask==1.1.2 +Flask==2.2.5 Flask_SQLAlchemy==2.5.1 SQLAlchemy==1.3.18 logzero==1.3.1 python-dotenv==0.19.1 itsdangerous==2.0.1 -sentry-sdk==1.7.2 +sentry-sdk==1.14.0 pg8000 PyYAML>=4.2b1 diskcache==5.4.0 itsdangerous==2.0.1 -Jinja2==3.0.3 -Werkzeug==1.0.0 \ No newline at end of file +Jinja2==3.1.3 +Werkzeug==2.3.8 \ No newline at end of file diff --git a/src/modules/indel_primer/requirements.txt b/src/modules/indel_primer/requirements.txt index 77ad7bb45..c5cb24295 100644 --- a/src/modules/indel_primer/requirements.txt +++ b/src/modules/indel_primer/requirements.txt @@ -1,5 +1,5 @@ logzero==1.3.1 python-dotenv==0.19.1 -sentry-sdk==1.7.2 +sentry-sdk==1.14.0 itsdangerous==2.0.1 -Jinja2==3.0.3 +Jinja2==3.1.3 diff --git a/src/modules/maintenance/requirements.txt b/src/modules/maintenance/requirements.txt index bfc964868..d31266fd3 100644 --- a/src/modules/maintenance/requirements.txt +++ b/src/modules/maintenance/requirements.txt @@ -1,8 +1,8 @@ -Flask==1.1.2 -Werkzeug==1.0.0 +Flask==2.2.5 +Werkzeug==2.3.8 WTForms==2.1 bleach==4.1.0 -Jinja2==3.0.3 +Jinja2==3.1.3 itsdangerous==2.0.1 pyOpenSSL==22.1.0 gunicorn \ No newline at end of file diff --git a/src/modules/site-v2/requirements.txt b/src/modules/site-v2/requirements.txt old mode 100755 new mode 100644 index 8c797feaa..e379afddc --- a/src/modules/site-v2/requirements.txt +++ b/src/modules/site-v2/requirements.txt @@ -3,7 +3,7 @@ boto3 cachelib click==6.7 feedgen==0.9.0 -Flask==1.1.2 +Flask==2.2.5 Flask_Caching==1.3.3 Flask_Compress==1.13 Flask-Dance==3.0.0 @@ -29,14 +29,14 @@ google_cloud_logging google-cloud-run grpcio gunicorn -httplib2==0.18.0 +httplib2==0.19.0 itsdangerous==2.0.1 logzero==1.3.1 Markdown==2.6.11 pandas==1.1.3 peewee==2.10.2 psycopg2-binary>=2.9.1 -pyarrow==0.17.1 +pyarrow==14.0.1 pyOpenSSL==22.1.0 pytabix python_dateutil==2.7.3 @@ -45,14 +45,14 @@ pytz==2017.3 PyYAML>=4.2b1 requests rich -sentry-sdk==1.7.2 +sentry-sdk==1.14.0 setuptools>=40.3.0 scipy simplejson==3.13.2 SQLAlchemy==1.3.18 unicode_slugify==0.1.3 -Werkzeug==1.0.0 +Werkzeug==2.3.8 WTForms==2.1 bleach==4.1.0 -Jinja2==3.0.3 +Jinja2==3.1.3 diff --git a/src/modules/site/requirements.txt b/src/modules/site/requirements.txt old mode 100755 new mode 100644 index bd1c8e817..b154948fe --- a/src/modules/site/requirements.txt +++ b/src/modules/site/requirements.txt @@ -3,7 +3,7 @@ boto3 cachelib click==6.7 feedgen==0.9.0 -Flask==1.1.2 +Flask==2.2.5 Flask_Caching==1.3.3 Flask-Dance==3.0.0 Flask_DebugToolbar==0.10.1 @@ -26,14 +26,14 @@ google-cloud-datastore google_cloud_logging grpcio gunicorn -httplib2==0.18.0 +httplib2==0.19.0 itsdangerous==2.0.1 logzero==1.3.1 Markdown==2.6.11 pandas==1.0.5 peewee==2.10.2 psycopg2-binary>=2.9.1 -pyarrow==0.17.1 +pyarrow==14.0.1 pyOpenSSL==22.1.0 pytabix python_dateutil==2.6.1 @@ -42,13 +42,13 @@ pytz==2017.3 PyYAML>=4.2b1 requests rich -sentry-sdk==1.7.2 +sentry-sdk==1.14.0 setuptools>=40.3.0 scipy simplejson==3.13.2 SQLAlchemy==1.3.18 unicode_slugify==0.1.3 -Werkzeug==1.0.0 +Werkzeug==2.3.8 WTForms==2.1 bleach==4.1.0 -Jinja2==3.0.3 +Jinja2==3.1.3 diff --git a/src/pkg/caendr/requirements.dev.txt b/src/pkg/caendr/requirements.dev.txt index 40e63af8d..0d8d922d6 100644 --- a/src/pkg/caendr/requirements.dev.txt +++ b/src/pkg/caendr/requirements.dev.txt @@ -1,7 +1,7 @@ backoff==2.2.1 cachelib Flask_SQLAlchemy==2.5.1 -Flask==1.1.2 +Flask==2.2.5 google-api-python-client google-cloud-datastore google_cloud_logging @@ -18,6 +18,6 @@ pandas plotly==5.3.0 psycopg2-binary>=2.9.1 python-dotenv==0.19.1 -sentry-sdk==1.7.2 -Jinja2==3.0.3 -Werkzeug==1.0.0 \ No newline at end of file +sentry-sdk==1.14.0 +Jinja2==3.1.3 +Werkzeug==2.3.8 \ No newline at end of file diff --git a/src/pkg/caendr/setup.py b/src/pkg/caendr/setup.py index a377c1778..726d06ba2 100644 --- a/src/pkg/caendr/setup.py +++ b/src/pkg/caendr/setup.py @@ -9,7 +9,7 @@ 'cachelib', 'cyvcf2==0.30.22', 'Flask_SQLAlchemy==2.5.1', - 'Flask==1.1.2', + 'Flask==2.2.5', 'protobuf==3.20.2', 'google-cloud-appengine-logging==0.1.0', 'google_cloud_audit_log==0.2.5', @@ -24,7 +24,7 @@ 'gtfparse==0.0.6', 'logzero==1.3.1', 'oauth2client', - 'numpy==1.19.5', + 'numpy==1.22.0', 'pandas==1.1.3', 'plotly==5.3.0', 'psycopg2-binary>=2.9.1', @@ -33,6 +33,6 @@ 'pytabix==0.1', 'importlib; python_version == "3.8.10"', 'scipy', - 'Werkzeug==1.0.0' + 'Werkzeug==2.3.8' ], )