DESCRIPTION

Package: micInt
Type: Package
Title: Find microbial interactions
Version: 0.18.3
Depends: R (>= 3.5.0), ggplot2, ggfortify
Imports: methods, infotheo, vegan, parallel, matrixStats, utils, magrittr, deSolve, 
    phyloseq, igraph, tibble, dplyr, rlang, glue, viridis, RhpcBLASctl
Suggests: readxl, ggrepel, ggdendro, kableExtra, cluster,
    testthat, BiocStyle, knitr, covr
Date: 2022-03-10
Authors@R: c(
   person(given = "Jakob Peder",
   family = "Pettersen",
   role = c("aut","cre"),
   email = "jakobpeder.pettersen@gmail.com",
   comment = c(ORCID = "0000-0002-3485-1634")
   ),
   person(given = "Emma",
   family = "Schwager",
   role = c("ctb")
   ),
   person(given = "Craig",
   family = "Bielski",
   role = c("ctb")
   ),
   person(given = "George",
   family = "Weingart",
   role = c("ctb")
   )
   )
Maintainer: Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com>
Description: This packages utilizes different approaches to find and analyze microbial interactions. 
    The CoNet approach utilzes similarity measures and 
    bootstrapping-permutation methology to find significant correlations between different 
    OTUs in a microbiome data set. The analysis are automized and run in parallel for
    convenient comparison of different similarity measures and methods. The Lotka-Volterra approach is
    based on time series and estimates the Lotka-Volterra coefficients.
NeedsCompilation: no
License: GPL-3
Encoding: UTF-8
biocViews: Software, Microbiome, TimeCourse,
     GraphAndNetwork, DimensionReduction, SystemsBiology
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.1.1