| layout | page |
|---|---|
| title | Member Resources |
- AMRrules Specification & Syntax - v1.0 [docs]
- AMRrules Technical Guidance - v1.6 [PDF]
- AMRrules Browser [website]
- AMRrules Software pacakge [docs]
- AMRrules Documentation [docs]
- AMRgen R package for analysing matched genotype/phenotype data [AMRgen repo]
- AMRrulemakeR R package for automating rule generation using AMRgen analyses [AMRrulemakeR repo]
- Code and tools for accessing public AMRFinderPlus + AST data [datacuration repo]
- CARD/Antimicrobial Resistance Ontology (ARO): [browser]
- Variant specification: HGVS
- AMRrules syntax: [docs]
- EUCAST: [Breakpoints] [Expected Resistance]
- NCBI AMRFinderPlus: [software]
- NCBI refgene (AMR Gene Catalog): [browser]
- NCBI AMR Reference Gene Hierarchy: [browser] [TXT file download]
- NCBI refseq: [browser]
- NCBI AST data: [browser]
- NCBI AST data submission: [info] [submission format]
- NCBI Taxonomy: [browser]
- Meeting slides: [github]
Before submitting rules for review, they should be first checked using the Python rulevalidator.