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jhawkeyjhawkey
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Merge branch 'main' of github.com:AMRverse/AMRrules
2 parents d849996 + 3bf1534 commit a6b2962

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‎tests/data/example_output/test_mycotb_20strains_genome_summary.tsv‎

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sample drug drug class clinical category phenotype evidence grade markers (non-S) markers (no rule) markers (S) ruleIDs combo rules organism
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SAMN06092486 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMN06092486 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMN06092486 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMN06092486 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMN06092486 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMN19694051 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis
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SAMEA8987085 gentamicin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0006 - s__Mycobacterium tuberculosis
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SAMEA8987085 tobramycin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0007 - s__Mycobacterium tuberculosis
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SAMEA113537957 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMEA113537957 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMEA113537957 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMEA113537957 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMEA113537957 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMN06092489 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis
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SAMEA9976912 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis
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SAMN18521315 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMN18521315 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMN18521315 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMN18521315 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMN18521315 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMEA7542362 gentamicin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0006 - s__Mycobacterium tuberculosis
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SAMEA7542362 tobramycin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0007 - s__Mycobacterium tuberculosis
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SAMEA7529217 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMEA7529217 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMEA7529217 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMEA7529217 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMEA7529217 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMN16448920 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMN16448920 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMN16448920 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMN16448920 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMN16448920 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMEA110013468 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMEA110013468 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMEA110013468 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMEA110013468 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMEA110013468 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMN31046552 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis
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SAMEA112805126 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMEA112805126 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMEA112805126 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMEA112805126 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMEA112805126 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMEA104362232 clindamycin lincosamide antibiotic R wildtype high erm(37) - - MTB0003 - s__Mycobacterium tuberculosis
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SAMEA104362232 azithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0001 - s__Mycobacterium tuberculosis
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SAMEA104362232 clarithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0002 - s__Mycobacterium tuberculosis
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SAMEA104362232 erythromycin macrolide antibiotic R wildtype high erm(37) - - MTB0004 - s__Mycobacterium tuberculosis
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SAMEA104362232 telithromycin macrolide antibiotic R wildtype high erm(37) - - MTB0005 - s__Mycobacterium tuberculosis
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SAMEA2533629 gentamicin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0006 - s__Mycobacterium tuberculosis
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SAMEA2533629 tobramycin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0007 - s__Mycobacterium tuberculosis
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SAMEA7549261 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis
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SAMEA4695197 gentamicin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0006 - s__Mycobacterium tuberculosis
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SAMEA4695197 tobramycin aminoglycoside antibiotic R wildtype high aac(2')-Ic - - MTB0007 - s__Mycobacterium tuberculosis
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SAMN13568008 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis
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SAMEA112804047 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis
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SAMN10663277 (all) penicillin beta-lactam R wildtype high blaC - - MTB0008 - s__Mycobacterium tuberculosis

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