Reporting, as requested (see below).
When running:
efe_van_ebi_ast_ftp <- download_ebi(
species = "Enterococcus faecium",
antibiotic = "vancomycin",
release = "2025-12",
reformat = TRUE,
interpret_clsi = TRUE,
interpret_ecoff = TRUE
)
Warning: There were 2 warnings in mutate().
The first warning was:
ℹ In argument: across(...).
Caused by warning:
! The ... argument of across() is deprecated as of dplyr 1.1.0.
Supply arguments directly to .fns through an anonymous function instead.
Previously
across(a:b, mean, na.rm = TRUE)
Now
across(a:b, (x) mean(x, na.rm = TRUE))
ℹ The deprecated feature was likely used in the AMRgen package.
Please report the issue at https://github.com/AMRverse/AMRgen/issues.
This warning is displayed once per session.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.
ℹ Run dplyr::last_dplyr_warnings() to see the 1 remaining warning.
Reporting, as requested (see below).
When running:
efe_van_ebi_ast_ftp <- download_ebi(
species = "Enterococcus faecium",
antibiotic = "vancomycin",
release = "2025-12",
reformat = TRUE,
interpret_clsi = TRUE,
interpret_ecoff = TRUE
)
Warning: There were 2 warnings in
mutate().The first warning was:
ℹ In argument:
across(...).Caused by warning:
! The
...argument ofacross()is deprecated as of dplyr 1.1.0.Supply arguments directly to
.fnsthrough an anonymous function instead.Previously
across(a:b, mean, na.rm = TRUE)
Now
across(a:b, (x) mean(x, na.rm = TRUE))
ℹ The deprecated feature was likely used in the AMRgen package.
Please report the issue at https://github.com/AMRverse/AMRgen/issues.
This warning is displayed once per session.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.
ℹ Run dplyr::last_dplyr_warnings() to see the 1 remaining warning.