spras/environment.yml at master · AMINOexe/spras · GitHub

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name: spras
channels:
  - conda-forge
dependencies:
  - adjusttext=0.7.3.1
  - bioconda::snakemake-minimal=8.17.0
  - docker-py=5.0
  - matplotlib=3.6
  - networkx=2.8
  - pandas=1.5
  - numpy=1.26.4
  - pre-commit=2.20 # Only required for development
  - pytest=8.0 # Only required for development
  - python=3.11
  - pip=22.1
  - requests=2.28
  - scikit-learn=1.2
  - seaborn=0.12
  - spython=0.2
  # for dsub
  - python-dateutil<=2.9.0
  - pytz<=2024.1
  - pyyaml<=6.0.1
  - tenacity<=8.2.3
  - tabulate<=0.9.0
  # Only required for GraphSpace
  - commonmark=0.9
  - docutils=0.19
  - jinja2=3.1
  - mock=4.0
  - recommonmark=0.7
  - sphinx=6.0
  - sphinx-rtd-theme=2.0.0
  - pip:
     - graphspace_python==1.3.1
     - dsub==0.4.13