VCC-project/CITATION.cff at main · ACTN3Bioinformatics/VCC-project · GitHub

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cff-version: 1.0.0
title: 'VCC-project: Single-Cell CRISPR Perturbation Pipeline'
message: 'If you use this software, please cite it as below.'
type: software
authors:
  - family-names: 'Myrta'
    given-names: 'Szymon'
    affiliation: 'ACTN3 Bioinformatics'
    orcid: 'https://orcid.org/0000-0003-1714-6105'
repository-code: 'https://github.com/ACTN3Bioinformatics/VCC-project'
url: 'https://github.com/ACTN3Bioinformatics/VCC-project'
abstract: >-
  A reproducible computational pipeline for processing and analyzing
  single-cell RNA-seq data with CRISPR perturbations, designed for
  the Virtual Cell Challenge 2025. Features automated quality control,
  normalization, class balancing, and batch integration using Snakemake.
keywords:
  - bioinformatics
  - single-cell
  - CRISPR
  - perturbation
  - RNA-seq
  - machine-learning
  - pipeline
  - snakemake
license: MIT
version: 1.0.0
date-released: '2025-10-26'